RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 ARL5AQ9Y689 179 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 GSTM1P09488 218 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 GJA1P17302 382 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 TFEBP19484 476 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 KCNA4P22459 653 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 AQP5P55064 265 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 GSTM4Q03013 218 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 MAP7D1Q3KQU3 841 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 FBXL19Q6PCT2 694 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 DENND6AQ8IWF6 608 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 RHEBL1Q8TAI7 183 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 STMN2Q93045 179 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 RAB7BQ96AH8 199 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 ZFRQ96KR1 1074 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 NKX2-4Q9H2Z4 354 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 LMCD1Q9NZU5 365 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 TMEM216Q9P0N5 145 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 CDH7Q9ULB5 785 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 KDM1AO60341 852 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 DNAJC6O75061 913 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 RFPL2O75678 378 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 IPO13O94829 963 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 AP2A2O94973 939 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 S1PR4O95977 384 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 MMP2P08253 660 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 SRCP12931 536 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 MAP4P27816 1152 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 CCNHP51946 323 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 ZNF140P52738 457 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 ADARP55265 1226 aaKnown RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 TRAF2Q12933 501 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 MPP2Q14168 576 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 KRT72Q14CN4 511 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 TYSND1Q2T9J0 566 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 SYTL3Q4VX76 610 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 ZNF697Q5TEC3 545 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 TMEM150AQ86TG1 271 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 C10orf107Q8IVU9 208 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 PGBD5Q8N414 524 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 PLEKHG4BQ96PX9 1271 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 DERL2Q9GZP9 239 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 NUDT4Q9NZJ9 180 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 CRYL1Q9Y2S2 319 aa8.37□□□□□ -1.07
USP54-203ENST00000418501 FNDC1Q4ZHG4 1894 aaPredicted RBP8.37□□□□□ -1.07
USP54-203ENST00000418501 LCHNA4D1U4 455 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PSMD11O00231 422 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 HDAC3O15379 428 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 GYG2O15488 501 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 NCF2P19878 526 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 SLC8A1P32418 973 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 EIF2DP41214 584 aaKnown RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 LIG3P49916 1009 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SMAD1Q15797 465 aaKnown RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 LDLRAP1Q5SW96 308 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ATXN7L2Q5T6C5 722 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 UBAP2Q5T6F2 1119 aaKnown RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 C16orf46Q6P387 395 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SERPINA13PQ6UXR4 307 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 TMC5Q6UXY8 1006 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 GPSM1Q86YR5 675 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 NRSN1Q8IZ57 195 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 RAB42Q8N4Z0 105 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 OR56A4Q8NGH8 313 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ING5Q8WYH8 240 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 EGFL8Q99944 293 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 POMKQ9H5K3 350 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 DKK3Q9UBP4 350 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SLC2A6Q9UGQ3 507 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 FKBPLQ9UIM3 349 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PSAT1Q9Y617 370 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 UPK3BL1B0FP48 263 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 UPK3BL2E5RIL1 263 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PER2O15055 1255 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 LZTS3O60299 673 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 PRAMEF1O95521 474 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SERPINA6P08185 405 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 KITP10721 976 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CYP2A7P20853 494 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 PHC3Q8NDX5 983 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SKA2Q8WVK7 121 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 SCRN2Q96FV2 425 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 OMDQ99983 421 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ZSCAN5AQ9BUG6 496 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 ZDHHC3Q9NYG2 299 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 SLC27A6Q9Y2P4 619 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 WNT6Q9Y6F9 365 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CCDC85CA6NKD9 419 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 HTRA2O43464 458 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 UGT2B4P06133 528 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 FDXRP22570 491 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 MAGEA10P43363 369 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 SCTRP47872 440 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 GLRBP48167 497 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 GALNT1Q10472 559 aaPredicted RBP8.36□□□□□ -1.07
USP54-203ENST00000418501 CNSTQ6PJW8 725 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 GPR149Q86SP6 731 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 CAMK1DQ8IU85 385 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 UNC5BQ8IZJ1 945 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 APCDD1Q8J025 514 aa8.36□□□□□ -1.07
USP54-203ENST00000418501 OR13C4Q8NGS5 318 aa8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 15.8 ms