RNA–Protein interactions for RNA: ENST00000413141.5

VPS41-204, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 575 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-204ENST00000413141 IL1BP01584 269 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ADRB3P13945 408 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CHN1P15882 459 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 TIMP2P16035 220 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 BPIP17213 487 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 XPAP23025 273 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 WASP42768 502 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 PSMD8P48556 350 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CSRP3P50461 194 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CLCN5P51795 746 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 NEK3P51956 506 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 SLC18A1P54219 525 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 DCDC1P59894 354 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 PPARDQ03181 441 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 PTSQ03393 145 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 TFF2Q03403 129 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 SLC18A2Q05940 514 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CACNG1Q06432 222 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ILF2Q12905 390 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 CAMK2GQ13555 558 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 TDGQ13569 410 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ARHGEF7Q14155 803 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 MPP2Q14168 576 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ZKSCAN8Q15776 578 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 C2orf27AQ580R0 203 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ZRANB3Q5FWF4 1079 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 AARS2Q5JTZ9 985 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 RNF187Q5TA31 235 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 PSAPL1Q6NUJ1 521 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CNSTQ6PJW8 725 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 FAM151BQ6UXP7 276 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 TRMT11Q7Z4G4 463 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 CMC1Q7Z7K0 106 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 LDB1Q86U70 411 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 MMAAQ8IVH4 418 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 PIANPQ8IYJ0 282 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CBARPQ8N350 705 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 PNPLA1Q8N8W4 532 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 GPATCH11Q8N954 259 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ANKRD42Q8N9B4 389 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 IL17RCQ8NAC3 791 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 GPR26Q8NDV2 337 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 MDM1Q8TC05 714 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 KCNV2Q8TDN2 545 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ACMSDQ8TDX5 336 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 LPGAT1Q92604 370 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 PBXIP1Q96AQ6 731 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ERLEC1Q96DZ1 483 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 PLEKHG4BQ96PX9 1271 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 HDAC8Q9BY41 377 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 RSPH9Q9H1X1 276 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 CAB39LQ9H9S4 337 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 KCNK9Q9NPC2 374 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 IL26Q9NPH9 171 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 DYRK4Q9NR20 520 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 INTS10Q9NVR2 710 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 NFKBIL1Q9UBC1 381 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 APPL1Q9UKG1 709 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ADAM21Q9UKJ8 722 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 CORO1CQ9ULV4 474 aaPredicted RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 DUSP12Q9UNI6 340 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 ITM2BQ9Y287 266 aa6.63□□□□□ -1.35
VPS41-204ENST00000413141 FNDC3AQ9Y2H6 1198 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 MTO1Q9Y2Z2 717 aaKnown RBP6.63□□□□□ -1.35
VPS41-204ENST00000413141 TRBV5-4A0A0C4DH59 114 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 H0Y858 1186 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 PSMD11O00231 422 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 PLK4O00444 970 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 COPEO14579 308 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 AREL1O15033 823 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 TM9SF1O15321 606 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 SYNCRIPO60506 623 aaKnown RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 SHOX2O60902 331 aaPredicted RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 ADAM23O75077 832 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 ZWINTO95229 277 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 KLF8O95600 359 aaPredicted RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 ADH1BP00325 375 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 ELFN1P0C7U0 828 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 HOXB2P14652 356 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 ITGALP20701 1170 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 COL9A1P20849 921 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 PMLP29590 882 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 TYK2P29597 1187 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 NTSR1P30989 418 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 RPA3P35244 121 aaPredicted RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 DRD3P35462 400 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 MDH1P40925 334 aaKnown RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 P2RY2P41231 377 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 POLD2P49005 469 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 SPINT3P49223 89 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 TTPAP49638 278 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 CDKN1CP49918 316 aaPredicted RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 SUOXP51687 545 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 COPAP53621 1224 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 PTPN5P54829 565 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 MRPS21P82921 87 aaKnown RBP6.62□□□□□ -1.35
VPS41-204ENST00000413141 SATB1Q01826 763 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 POU4F1Q01851 419 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 GUCY1A3Q02108 690 aa6.62□□□□□ -1.35
VPS41-204ENST00000413141 ZP2Q05996 745 aa6.62□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms