RNA–Protein interactions for RNA: ENST00000409050.1

SCN1A-203, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 5 BASIC

Gene SCN1A, Length 5,946 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-203ENST00000409050 C8GP07360 202 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GSTM3P21266 225 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SHMT1P34896 483 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 HNF4AP41235 474 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 KIR3DL1P43629 444 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 THOP1P52888 689 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 AP1S1P61966 158 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 MRPS5P82675 430 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CNSTQ6PJW8 725 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 RTL4Q6ZR62 310 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 VN1R5Q7Z5H4 357 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 DSELQ8IZU8 1212 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ARL10Q8N8L6 244 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PYDC1Q8WXC3 89 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SPOCK2Q92563 424 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 SLCO2A1Q92959 643 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ZNF668Q96K58 619 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 RC3H2Q9HBD1 1191 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GPRC5CQ9NQ84 441 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 MRPL17Q9NRX2 175 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 MIOSQ9NXC5 875 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 BAIAP2Q9UQB8 552 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 E2F8A0AVK6 867 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ELOVL7A1L3X0 281 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PLIN3O60664 434 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 HMGN1P05114 100 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 RHOQP17081 205 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 ITIH1P19827 911 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PSMB4P28070 264 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PBX1P40424 430 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CACNG1Q06432 222 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 PDCD4Q53EL6 469 aaKnown RBP6.09□□□□□ -1.43
SCN1A-203ENST00000409050 STX12Q86Y82 276 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 TSPEARQ8WU66 669 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 OR52E6Q96RD3 313 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 DUSP16Q9BY84 665 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 OSGEPL1Q9H4B0 414 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GLOD4Q9HC38 313 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 FAM50BQ9Y247 325 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 CHKBQ9Y259 395 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 HEBP2Q9Y5Z4 205 aa6.09□□□□□ -1.43
SCN1A-203ENST00000409050 GABRDO14764 452 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 SASH3O75995 380 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 PAX7P23759 505 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 NDST2P52849 883 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 CRYBB1P53674 252 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-203ENST00000409050 FMO1Q01740 532 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 ZBTB6Q15916 424 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 DDI2Q5TDH0 399 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 SULT1C3Q6IMI6 304 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 LCLAT1Q6UWP7 414 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 GET4Q7L5D6 327 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-203ENST00000409050 CLNKQ7Z7G1 428 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 SLCO6A1Q86UG4 719 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 CUZD1Q86UP6 607 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 P2RY8Q86VZ1 359 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 POU5F2Q8N7G0 328 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 LINC00116Q8NCU8 138 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 PIH1D2Q8WWB5 315 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 HPS1Q92902 700 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 ACSF2Q96CM8 615 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-203ENST00000409050 AP2M1Q96CW1 435 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 CXorf40BQ96DE9 158 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 AHCYL2Q96HN2 611 aaKnown RBP6.09□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF514Q96K75 400 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-203ENST00000409050 ZCWPW1Q9H0M4 648 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 PCDH18Q9HCL0 1135 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF282Q9UDV7 671 aaPredicted RBP6.09□□□□□ -1.44
SCN1A-203ENST00000409050 SLC12A4Q9UP95 1085 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 WDR37Q9Y2I8 494 aa6.09□□□□□ -1.44
SCN1A-203ENST00000409050 NID2Q14112 1375 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 LOC100506127A0A0U1RQW1 187 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RIIAD1A6NNX1 92 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 BCKDKO14874 412 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 NDUFB5O43674 189 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 FADS2O95864 444 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 IFNW1P05000 195 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RPS9P46781 194 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 LIMK2P53671 638 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF33AQ06730 810 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 LCP2Q13094 533 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 MIIPQ5JXC2 388 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SNAP47Q5SQN1 464 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 CELF3Q5SZQ8 465 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RINLQ6ZS11 566 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 C17orf64Q86WR6 236 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 TMEM161BQ8NDZ6 487 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 BRSK1Q8TDC3 778 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 BTN2A3PQ96KV6 586 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 NSMCE3Q96MG7 304 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 ZNF558Q96NG5 402 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 MED28Q9H204 178 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 DENND2DQ9H6A0 471 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 SEMA4BQ9NPR2 832 aaPredicted RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RAB23Q9ULC3 237 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 RPL36Q9Y3U8 105 aaKnown RBP6.08□□□□□ -1.44
SCN1A-203ENST00000409050 PCDHGA10Q9Y5H3 936 aa6.08□□□□□ -1.44
SCN1A-203ENST00000409050 MAGED1Q9Y5V3 778 aaPredicted RBP6.08□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms