RNA–Protein interactions for RNA: ENST00000405925.2

LIG4-202, Transcript of DNA ligase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene LIG4, Length 4,065 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG4-202ENST00000405925 STARD13Q9Y3M8 1113 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ORC6Q9Y5N6 252 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 USP3Q9Y6I4 520 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ANKRD66B4E2M5 251 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 FFAR3O14843 346 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 GPR42O15529 346 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 PCCBP05166 539 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ALOX15P16050 662 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 SLC1A2P43004 574 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 PIK3CGP48736 1102 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 LRRC74AQ0VAA2 488 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 PRKD1Q15139 912 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 PLA2G4EQ3MJ16 856 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ATP6AP1LQ52LC2 224 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ZDHHC20Q5W0Z9 365 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TRNP1Q6NT89 227 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 DPY19L2P1Q6NXN4 242 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TMEM25Q86YD3 366 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TEX9Q8N6V9 391 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ZNF513Q8N8E2 541 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 CDYL2Q8N8U2 506 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 ASZ1Q8WWH4 475 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 PGAP3Q96FM1 320 aaPredicted RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 CDKN2AIPNLQ96HQ2 116 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 THUMPD3Q9BV44 507 aaKnown RBP9.08□□□□□ -0.96
LIG4-202ENST00000405925 RUBCNLQ9H714 662 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 SLCO3A1Q9UIG8 710 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 TRIOBPQ9H2D6 2365 aa9.08□□□□□ -0.96
LIG4-202ENST00000405925 EVPLLA8MZ36 301 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 H3BQ06 376 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 AGPSO00116 658 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SCAMP1O15126 338 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 DCXO43602 365 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 THRAP10827 490 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MYOGP15173 224 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 RPL14P50914 215 aaKnown RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 ITPRIPL2Q3MIP1 535 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 IL27RAQ6UWB1 636 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SCIMPQ6UWF3 145 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 C16orf89Q6UX73 402 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MTSS1LQ765P7 747 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 PHYKPLQ8IUZ5 450 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 POU5F2Q8N7G0 328 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 OXNAD1Q96HP4 312 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 PSKH2Q96QS6 385 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 IMP3Q9NV31 184 aaKnown RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 SLC2A6Q9UGQ3 507 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 ZNF180Q9UJW8 692 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 KCTD3Q9Y597 815 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 PTPRZ1P23471 2315 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 RNF103-CHMP3A0A140T963 221 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MEI4A8MW99 385 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 GLDCP23378 1020 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 IFNA8P32881 189 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MAGEA10P43363 369 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 DMC1Q14565 340 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MYLK3Q32MK0 819 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 FBXO48Q5FWF7 155 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 TMEM240Q5SV17 173 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 LCA5Q86VQ0 697 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 CPNE9Q8IYJ1 553 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SELENOMQ8WWX9 145 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 ATL1Q8WXF7 558 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SORCS1Q8WY21 1168 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 TCEAL4Q96EI5 215 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 RTP3Q9BQQ7 232 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 TMEM109Q9BVC6 243 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 NSUN3Q9H649 340 aaKnown RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 WDR41Q9HAD4 459 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 EFCAB1Q9HAE3 211 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 ZDHHC4Q9NPG8 344 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 ELOVL2Q9NXB9 296 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 CACNA2D2Q9NY47 1150 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 VTI1BQ9UEU0 232 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MAFFQ9ULX9 164 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 PLLPQ9Y342 182 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 TEX264Q9Y6I9 313 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 ATP6AP2A0A1C7CYW4 349 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 NPEPPSL1A6NEC2 478 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 CXorf49A8MYA2 514 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 H3BM21 787 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SEC22BO75396 215 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 LYPLA1O75608 230 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 ATP6AP2O75787 350 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 KELP23276 732 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 MAGEA9P43362 315 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SIX1Q15475 284 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 RAB41Q5JT25 222 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 LIPMQ5VYY2 423 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 CCSAPQ6IQ19 270 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 UBE2R2Q712K3 238 aaPredicted RBP9.07□□□□□ -0.96
LIG4-202ENST00000405925 CYP4X1Q8N118 509 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 KCNV2Q8TDN2 545 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 HEXDCQ8WVB3 486 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 HMGB4Q8WW32 186 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 SIPA1Q96FS4 1042 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 ASB2Q96Q27 587 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 TCF12Q99081 682 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 GIMAP4Q9NUV9 329 aa9.07□□□□□ -0.96
LIG4-202ENST00000405925 KCTD5Q9NXV2 234 aa9.07□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 31 ms