RNA–Protein interactions for RNA: ENST00000405805.5

HMGB1-206, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 4,199 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-206ENST00000405805 MRPL57Q9BQC6 102 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 TINF2Q9BSI4 451 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 HERC2P3Q9BVR0 1158 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PRRG3Q9BZD7 231 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ST14Q9Y5Y6 855 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 KNL1Q8NG31 2342 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 BTBD19C9JJ37 291 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 TREHO43280 583 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 GLP2RO95838 553 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 LDLRP01130 860 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ARRB2P32121 409 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 OR1G1P47890 313 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 MGAT5BQ3V5L5 792 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ATP6AP1LQ52LC2 224 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZC3HC1Q86WB0 502 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CIR1Q86X95 450 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CLIP4Q8N3C7 705 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 LRRC20Q8TCA0 184 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF512Q96ME7 567 aaPredicted RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ACOX2Q99424 681 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PARK7Q99497 189 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZBTB18Q99592 522 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CLK4Q9HAZ1 481 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 LRRC14BA6NHZ5 514 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF12P17014 697 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ZFP69Q49AA0 526 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 NOL9Q5SY16 702 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 CEP97Q8IW35 865 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ABI1Q8IZP0 508 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 FBXO39Q8N4B4 442 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 TXNDC5Q8NBS9 432 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 FAM162AQ96A26 154 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 MTFMTQ96DP5 389 aaKnown RBP11.93□□□□□ -0.5
HMGB1-206ENST00000405805 ABHD16BQ9H3Z7 469 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 VWA7Q9Y334 891 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 PPME1Q9Y570 386 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 NUP205Q92621 2012 aa11.93□□□□□ -0.5
HMGB1-206ENST00000405805 FFAR3O14843 346 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 GPR42O15529 346 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 IPO13O94829 963 aaKnown RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 GRIA2P42262 883 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 INHBCP55103 352 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 OSTM1Q86WC4 334 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 CAMK1DQ8IU85 385 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 GIPC2Q8TF65 315 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 PPP1R10Q96QC0 940 aaKnown RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 KCNA7Q96RP8 456 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 MRPL9Q9BYD2 267 aaKnown RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 C8orf4Q9NR00 106 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 UXTQ9UBK9 157 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 LIMD1Q9UGP4 676 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 KCTD3Q9Y597 815 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 ANKRD31Q8N7Z5 1873 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 LY75O60449 1722 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 PABPC4LP0CB38 370 aaKnown RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 DBTP11182 482 aaKnown RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 ALDH4A1P30038 563 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 GPR142Q7Z601 462 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 NPWQ8N729 165 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 NSMCE2Q96MF7 247 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF717Q9BY31 904 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 VTA1Q9NP79 307 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF224Q9NZL3 707 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 SPATA2Q9UM82 520 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 UBXN8O00124 270 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 PSMD3O43242 534 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 PAGE1O75459 146 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 FKBP9O95302 570 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 NADKO95544 446 aaPredicted RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 POLR2EP19388 210 aaKnown RBP11.92□□□□□ -0.5
HMGB1-206ENST00000405805 DSC2Q02487 901 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 CHRNB3Q05901 458 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 NAB1Q13506 487 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 MRNIPQ6NTE8 343 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 POTEHQ6S545 545 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 FKBP9P1Q75LS8 142 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 TAC4Q86UU9 113 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 ZNF410Q86VK4 478 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 FAM126BQ8IXS8 530 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 SLC43A3Q8NBI5 491 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 FBXL20Q96IG2 436 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 SLC29A1Q99808 456 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 OSBPL11Q9BXB4 747 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 SLC7A5P2Q9GIP4 190 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 GBA3Q9H227 469 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 CXorf21Q9HAI6 301 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 GLOD4Q9HC38 313 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 PNPLA3Q9NST1 481 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 PCDH10Q9P2E7 1040 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 RAB26Q9ULW5 256 aa11.92□□□□□ -0.5
HMGB1-206ENST00000405805 RRN3P2A6NIE6 340 aa11.91□□□□□ -0.5
HMGB1-206ENST00000405805 LZTS3O60299 673 aaPredicted RBP11.91□□□□□ -0.5
HMGB1-206ENST00000405805 KCNH1O95259 989 aa11.91□□□□□ -0.5
HMGB1-206ENST00000405805 BMP10O95393 424 aa11.91□□□□□ -0.5
HMGB1-206ENST00000405805 MZF1P28698 734 aaPredicted RBP11.91□□□□□ -0.5
HMGB1-206ENST00000405805 HARS2P49590 506 aaKnown RBP11.91□□□□□ -0.5
HMGB1-206ENST00000405805 GHRHRQ02643 423 aa11.91□□□□□ -0.5
HMGB1-206ENST00000405805 ARHGAP1Q07960 439 aa11.91□□□□□ -0.5
HMGB1-206ENST00000405805 DDX39BQ13838 428 aaKnown RBP11.91□□□□□ -0.5
HMGB1-206ENST00000405805 CFAP52Q8N1V2 620 aa11.91□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 25 ms