RNA–Protein interactions for RNA: ENST00000396828.8

NEDD8-202, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 626 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-202ENST00000396828 TMEM202A6NGA9 273 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 A8MX80 341 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 APOL1O14791 398 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 CST8O60676 142 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 PRAMEF11O60813 436 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 PCCBP05166 539 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 RBMS1P29558 406 aaKnown RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 MMP12P39900 470 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 PAPOLAP51003 745 aaKnown RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 DYNLT1P63172 113 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 VAC14Q08AM6 782 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 RALGDSQ12967 914 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 CLN3Q13286 438 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 NFATC4Q14934 902 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 LLGL1Q15334 1064 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 TGIF1Q15583 401 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 PARP15Q460N3 678 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 TAF1BQ53T94 588 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 BROXQ5VW32 411 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 RFX8Q6ZV50 586 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 BBS12Q6ZW61 710 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 SDR16C5Q8N3Y7 309 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 NPWQ8N729 165 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 SNRNP27Q8WVK2 155 aaKnown RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 CASKIN2Q8WXE0 1202 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 OR1E3Q8WZA6 343 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 FAF2Q96CS3 445 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 PDXPQ96GD0 296 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 TBATAQ96M53 351 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 CSPG4P5Q96PW8 444 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 RNF157Q96PX1 679 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 LGR4Q9BXB1 951 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 FRMD8P1Q9BZ68 369 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 DPH1Q9BZG8 443 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 EVA1BQ9NVM1 165 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 DONSONQ9NYP3 566 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 SMARCAL1Q9NZC9 954 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 NCKIPSDQ9NZQ3 722 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 CWC15Q9P013 229 aaKnown RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 UBA2Q9UBT2 640 aaPredicted RBP10.36□□□□□ -0.75
NEDD8-202ENST00000396828 COL6A6A6NMZ7 2263 aa10.36□□□□□ -0.75
NEDD8-202ENST00000396828 SCN8AQ9UQD0 1980 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 UNC13CQ8NB66 2214 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 SPENQ96T58 3664 aaKnown RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 EFCAB8A8MWE9 144 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 FGF10O15520 208 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 NOBOXO60393 691 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 TCEA3O75764 348 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 CTSEP14091 401 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 XPAP23025 273 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 IL4RP24394 825 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 RPIAP49247 311 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 SRP54P61011 504 aaKnown RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 RAD51Q06609 339 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 C2orf54Q08AI8 447 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 MMRN1Q13201 1228 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 KLF1Q13351 362 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 SPIDRQ14159 915 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 PTPRRQ15256 657 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 ESRP1Q6NXG1 681 aaKnown RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 BZW1Q7L1Q6 419 aaKnown RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 TMPRSS9Q7Z410 1059 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 CLEC14AQ86T13 490 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 SRLQ86TD4 932 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 ARHGAP12Q8IWW6 846 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 ARL10Q8N8L6 244 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 CCL4L1Q8NHW4 92 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 WDR36Q8NI36 951 aaKnown RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 P3H4Q92791 437 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 NAT6Q93015 286 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 RUNDC3BQ96NL0 473 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 CATSPERBQ9H7T0 1116 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 EPB41L5Q9HCM4 733 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 FGF22Q9HCT0 170 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 FEZ2Q9UHY8 353 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 ATXN7L1Q9ULK2 861 aaPredicted RBP10.35□□□□□ -0.75
NEDD8-202ENST00000396828 GPR34Q9UPC5 381 aa10.35□□□□□ -0.75
NEDD8-202ENST00000396828 AHCTF1Q8WYP5 2266 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 CCDC187A0A096LP49 1063 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 TCRBV7S2A1N4TA0A589 114 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 K7ENP7 123 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 APOC4-APOC2K7ER74 178 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 PHF2O75151 1096 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 RECQL5O94762 991 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-202ENST00000396828 APOC2P02655 101 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 FUCA1P04066 466 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 RPLP0P05388 317 aaKnown RBP10.34□□□□□ -0.75
NEDD8-202ENST00000396828 UGT1A5P35504 534 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 NR2C2P49116 596 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 UCNP55089 124 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 RHDQ02161 417 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 ELP6Q0PNE2 266 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 DPYSQ14117 519 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 AGERQ15109 404 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 ELOCQ15369 112 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 CCNG2Q16589 344 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 AFMIDQ63HM1 303 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 SLC9A4Q6AI14 798 aa10.34□□□□□ -0.75
NEDD8-202ENST00000396828 INO80CQ6PI98 192 aaPredicted RBP10.34□□□□□ -0.75
NEDD8-202ENST00000396828 TMCO3Q6UWJ1 677 aa10.34□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms