RNA–Protein interactions for RNA: ENST00000396578.7

COL4A3-202, Transcript of collagen type IV alpha 3 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL4A3, Length 8,097 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A3-202ENST00000396578 PRAMEF33A0A0G2JMD5 474 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 PRAMEF10O60809 474 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 NTSR2O95665 410 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 CPSF6Q16630 551 aaKnown RBP eCLIP13.96□□□□□ -0.18
COL4A3-202ENST00000396578 FRRS1Q6ZNA5 592 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 GAL3ST3Q96A11 431 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 C3orf14Q9HBI5 128 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 GSC2O15499 205 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 PGRP06401 933 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 DEFB128Q7Z7B8 93 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 RNF157Q96PX1 679 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 SLCO1B3Q9NPD5 702 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 ZNF446Q9NWS9 450 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 GULP1Q9UBP9 304 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 NUP50Q9UKX7 468 aa13.96□□□□□ -0.18
COL4A3-202ENST00000396578 TRAFD1O14545 582 aaPredicted RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 PRMT5O14744 637 aaPredicted RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ORC5O43913 435 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 LPOP22079 712 aaPredicted RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 EIF2S3LQ2VIR3 472 aaKnown RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 EPS8L1Q8TE68 723 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ULBP1Q9BZM6 244 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 MED11Q9P086 117 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 MAZP56270 477 aaKnown RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SAMD7Q7Z3H4 446 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 RBFAQ8N0V3 343 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 OR4L1Q8NH43 312 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 DNAJA4Q8WW22 397 aaPredicted RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SLC35C1Q96A29 364 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 TRMOQ9BU70 441 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ACSS3Q9H6R3 686 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 FADS2P1A8MWK0 482 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 FPGTO14772 594 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 BANF1O75531 89 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 GNRH1P01148 92 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 PRLP01236 227 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 FGBP02675 491 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 RPL22P35268 128 aaKnown RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 C1orf189Q5VU69 101 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 CIB1Q99828 191 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 MGME1Q9BQP7 344 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 IL25Q9H293 177 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 POLR2JP52435 117 aaKnown RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 NRG3P56975 720 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ZNF662Q6ZS27 426 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 MARCH7Q9H992 704 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 XPR1Q9UBH6 696 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 CDH22Q9UJ99 828 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SLC9A3R1O14745 358 aaPredicted RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 MID1O15344 667 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 DNAJA2O60884 412 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ABRQ12979 859 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 FAM91A1Q658Y4 838 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 CHSY3Q70JA7 882 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 TMEM165Q9HC07 324 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 TCRBV9S1A1TA0A576 114 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 PRR5-ARHGAP8B1AHC4 643 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 GSTT2BP0CG30 244 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ARHGAP8P85298 464 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SPATA6LQ8N4H0 392 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SLC27A6Q9Y2P4 619 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 ERAL1O75616 437 aaKnown RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 CCNDBP1O95273 360 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 CHKAP35790 457 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 HNF4AP41235 474 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 PSEN1P49768 467 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 PITPNAQ00169 270 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 LIPEQ05469 1076 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 PSMD5Q16401 504 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 BMT2Q1RMZ1 405 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 USP41Q3LFD5 358 aa13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SWT1Q5T5J6 900 aaKnown RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 SMPD3Q9NY59 655 aaPredicted RBP13.95□□□□□ -0.18
COL4A3-202ENST00000396578 TBC1D3BA6NDS4 549 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 TRBC1P01850 177 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 DNTTP04053 509 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 LINC00116Q8NCU8 138 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 SPATC1LQ9H0A9 340 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 SLC6A15Q9H2J7 730 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 ANGPTL1O95841 491 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 MYBL2P10244 700 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 SLC9A4Q6AI14 798 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 LEMD2Q8NC56 503 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 SIPA1Q96FS4 1042 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 SLC4A9Q96Q91 983 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 TRPS1Q9UHF7 1281 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 RIIAD1A6NNX1 92 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 FABP3P05413 133 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 ZNF12P17014 697 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 CRHR1P34998 444 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 MSX2P35548 267 aaPredicted RBP13.94□□□□□ -0.18
COL4A3-202ENST00000396578 STXBP1P61764 594 aaKnown RBP13.94□□□□□ -0.18
COL4A3-202ENST00000396578 SPPL2CQ8IUH8 684 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 CPSF7Q8N684 471 aaKnown RBP13.94□□□□□ -0.18
COL4A3-202ENST00000396578 CCDC177Q9NQR7 707 aaPredicted RBP13.94□□□□□ -0.18
COL4A3-202ENST00000396578 A0A087X0B3 334 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 PRKCIP41743 596 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 TMC8Q8IU68 726 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 TMCO6Q96DC7 493 aa13.94□□□□□ -0.18
COL4A3-202ENST00000396578 FERD3LQ96RJ6 166 aa13.94□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms