RNA–Protein interactions for RNA: ENST00000392003.6

COL6A3-204, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2 BASIC

Gene COL6A3, Length 3,464 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-204ENST00000392003 ADA2Q9NZK5 511 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ATP11BQ9Y2G3 1177 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 CRYL1Q9Y2S2 319 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 COPG1Q9Y678 874 aaKnown RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 PTPRDP23468 1912 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TTC24A2A3L6 582 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 CCL22O00626 93 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TLR5O60602 858 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 NBNO60934 754 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ASLP04424 464 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 IDO1P14902 403 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SLC26A3P40879 764 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SLC11A1P49279 550 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 KCTD21Q4G0X4 260 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 IL31Q6EBC2 164 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 ZFP1Q6P2D0 407 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 LDB1Q86U70 411 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 CUZD1Q86UP6 607 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 NPAS4Q8IUM7 802 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 LILRB2Q8N423 598 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TTC9BQ8N6N2 239 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 VPS37AQ8NEZ2 397 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 OR13J1Q8NGT2 312 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 SHKBP1Q8TBC3 707 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 TBATAQ96M53 351 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 COMMD8Q9NX08 183 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 C6orf203Q9P0P8 240 aaPredicted RBP9.64□□□□□ -0.87
COL6A3-204ENST00000392003 PSMD13Q9UNM6 376 aa9.64□□□□□ -0.87
COL6A3-204ENST00000392003 DRGXA6NNA5 263 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 TACR2P21452 398 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PKNOX1P55347 436 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 CTAG1AP78358 180 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 RING1Q06587 406 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PDAP1Q13442 181 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 SQLEQ14534 574 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 GPR158Q5T848 1215 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 LPCAT4Q643R3 524 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF683Q8IZ20 524 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 USP13Q92995 863 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 HSPBAP1Q96EW2 488 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 CDK5RAP1Q96SZ6 601 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 Q9H521 79 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 DKK3Q9UBP4 350 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 NLRC5Q86WI3 1866 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 CD3EAPO15446 510 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 KDM1AO60341 852 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 S1PR4O95977 384 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 RCVRNP35243 200 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ACVRL1P37023 503 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 SLC11A2P49281 568 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 SULT2A1Q06520 285 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 LSAMPQ13449 338 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 MAP7Q14244 749 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 RARS2Q5T160 578 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 DTX3Q8N9I9 347 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 CATSPER1Q8NEC5 780 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ARRDC2Q8TBH0 407 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 GIMAP1Q8WWP7 306 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PEX13Q92968 403 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 MPP4Q96JB8 637 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ZNF599Q96NL3 588 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 TTPALQ9BTX7 342 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 VCX3AQ9NNX9 186 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 IL37Q9NZH6 218 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 DOLKQ9UPQ8 538 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 DTNAQ9Y4J8 743 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PATJQ8NI35 1801 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 LOC285095A0A1B0GVY8 99 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 UBA6A0AVT1 1052 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 MTMR11A4FU01 709 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 MROH6A6NGR9 719 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 OR51F1A6NGY5 319 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 BUD23O43709 281 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PRAMEF11O60813 436 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 RPP40O75818 363 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 EPOP01588 193 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 JUNP05412 331 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 MMP2P08253 660 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 IMPDH1P20839 514 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ARSDP51689 593 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ADARP55265 1226 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 GPR17Q13304 367 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PTK2BQ14289 1009 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 FASTKQ14296 549 aaKnown RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 INAQ16352 499 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 BCL2A1Q16548 175 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 AGKQ53H12 422 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PRSS55Q6UWB4 352 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 ANKS3Q6ZW76 656 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 KBTBD6Q86V97 674 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 SPATA24Q86W54 205 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PQLC1Q8N2U9 271 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PAF1Q8N7H5 531 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 BRSK1Q8TDC3 778 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 PMM1Q92871 262 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 RMDN1Q96DB5 314 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 CINPQ9BW66 212 aaPredicted RBP9.63□□□□□ -0.87
COL6A3-204ENST00000392003 CATSPERZQ9NTU4 200 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 HCSTQ9UBK5 93 aa9.63□□□□□ -0.87
COL6A3-204ENST00000392003 SEPT3Q9UH03 358 aa9.63□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms