RNA–Protein interactions for RNA: ENST00000380075.6

TRIM54-202, Transcript of tripartite motif containing 54, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM54, Length 1,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM54-202ENST00000380075 MEAF6Q9HAF1 191 aa21.52■■□□□ 1.04
TRIM54-202ENST00000380075 IRAK3Q9Y616 596 aa21.52■■□□□ 1.04
TRIM54-202ENST00000380075 WASF2Q9Y6W5 498 aa21.52■■□□□ 1.04
TRIM54-202ENST00000380075 LATS1O95835 1130 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 KCNA5P22460 613 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 PMLP29590 882 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 ZNF140P52738 457 aaPredicted RBP21.51■■□□□ 1.03
TRIM54-202ENST00000380075 INHBCP55103 352 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 TMEM207Q6UWW9 146 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 ADGRD2Q7Z7M1 963 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 LDB1Q86U70 411 aaPredicted RBP21.51■■□□□ 1.03
TRIM54-202ENST00000380075 CUZD1Q86UP6 607 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 OR13C4Q8NGS5 318 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 RHEBL1Q8TAI7 183 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 MYLIPQ8WY64 445 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 CATSPER2Q96P56 530 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 MYCBPQ99417 103 aaPredicted RBP21.51■■□□□ 1.03
TRIM54-202ENST00000380075 AARSD1Q9BTE6 412 aaKnown RBP21.51■■□□□ 1.03
TRIM54-202ENST00000380075 SUDS3Q9H7L9 328 aaPredicted RBP21.51■■□□□ 1.03
TRIM54-202ENST00000380075 CYP4F12Q9HCS2 524 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 SCUBE2Q9NQ36 999 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 POMPQ9Y244 141 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 VPS9D1Q9Y2B5 631 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 CRYL1Q9Y2S2 319 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 MTCH2Q9Y6C9 303 aa21.51■■□□□ 1.03
TRIM54-202ENST00000380075 MYO7AQ13402 2215 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 ALDH1A3P47895 512 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 NUDT2P50583 147 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 PDE12Q6L8Q7 609 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 ZNF549Q6P9A3 640 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 CHSY3Q70JA7 882 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 PELI3Q8N2H9 469 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 OR52K2Q8NGK3 314 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 PPP1R36Q96LQ0 422 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 GAS2L1Q99501 681 aaPredicted RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 CLSTN3Q9BQT9 956 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 TDRD1Q9BXT4 1180 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 ALG9Q9H6U8 611 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 SYTL2Q9HCH5 934 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 KLKB1P03952 638 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 JUNP05412 331 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 CNPP09543 421 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 CD1DP15813 335 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 BLMHQ13867 455 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 VEPH1Q14D04 833 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 TAF12Q16514 161 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 ZNF678Q5SXM1 525 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 RBM23Q86U06 439 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 KLF16Q9BXK1 252 aaPredicted RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 GSTO2Q9H4Y5 243 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 EFCAB1Q9HAE3 211 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 LMCD1Q9NZU5 365 aa21.5■■□□□ 1.03
TRIM54-202ENST00000380075 AGO1Q9UL18 857 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 COPG1Q9Y678 874 aaKnown RBP21.5■■□□□ 1.03
TRIM54-202ENST00000380075 C2orf81A6NN90 581 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 PER2O15055 1255 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 TEX28O15482 410 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 ZMPSTE24O75844 475 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 PDE5AO76074 875 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 SEC24AO95486 1093 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 HNRNPLP14866 589 aaKnown RBP eCLIP21.49■■□□□ 1.03
TRIM54-202ENST00000380075 ZNF37AP17032 561 aaPredicted RBP21.49■■□□□ 1.03
TRIM54-202ENST00000380075 SCNN1BP51168 640 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 MAPRE2Q15555 327 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 TRIM68Q6AZZ1 485 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 GLT6D1Q7Z4J2 308 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 RAB44Q7Z6P3 723 aaPredicted RBP21.49■■□□□ 1.03
TRIM54-202ENST00000380075 PGAM4Q8N0Y7 254 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 RMDN1Q96DB5 314 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 ZNF184Q99676 751 aaPredicted RBP21.49■■□□□ 1.03
TRIM54-202ENST00000380075 TFB2MQ9H5Q4 396 aaKnown RBP21.49■■□□□ 1.03
TRIM54-202ENST00000380075 BCAP29Q9UHQ4 241 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 STOML2Q9UJZ1 356 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 YIPF1Q9Y548 306 aa21.49■■□□□ 1.03
TRIM54-202ENST00000380075 TMEM233B4DJY2 109 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 AIM2O14862 343 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 PFDN6O15212 129 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 POU3F3P20264 500 aaPredicted RBP21.48■■□□□ 1.03
TRIM54-202ENST00000380075 HERVK_113P63132 956 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 PDAP1Q13442 181 aaKnown RBP21.48■■□□□ 1.03
TRIM54-202ENST00000380075 CCNIQ14094 377 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 CYTH1Q15438 398 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 PIM3Q86V86 326 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 GPR65Q8IYL9 337 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 DSELQ8IZU8 1212 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 PHF21BQ96EK2 531 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 ERVK-6Q9BXR3 956 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 ADGRE3Q9BY15 652 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 RGRP47804 291 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 PEX6Q13608 980 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 SQLEQ14534 574 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 SEMA3AQ14563 771 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 TMEM198Q66K66 360 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 BNC2Q6ZN30 1099 aaPredicted RBP21.48■■□□□ 1.03
TRIM54-202ENST00000380075 HPS6Q86YV9 775 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 MFN1Q8IWA4 741 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 TTC1Q99614 292 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 VCX3BQ9H321 246 aa21.48■■□□□ 1.03
TRIM54-202ENST00000380075 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP21.48■■□□□ 1.03
TRIM54-202ENST00000380075 PPM1HQ9ULR3 514 aa21.48■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms