RNA–Protein interactions for RNA: ENST00000360535.8

CLIP3-201, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CLIP3, Length 3,370 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-201ENST00000360535 FGF10O15520 208 aaPredicted RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 CLASP2O75122 1294 aaKnown RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 ACVRL1P37023 503 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 SEMA3AQ14563 771 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 MYBPC3Q14896 1274 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 RBBP7Q16576 425 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 TIGD2Q4W5G0 525 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 KDELC1Q6UW63 502 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 GABPB2Q8TAK5 448 aaPredicted RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 ITFG2Q969R8 447 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 CDK15Q96Q40 435 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 CD3EAPO15446 510 aaKnown RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 THPOP40225 353 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 HERVK_113P63132 956 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 TXNL4AP83876 142 aaKnown RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 PPP1R8Q12972 351 aaKnown RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 FSCN1Q16658 493 aaKnown RBP12.11□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF549Q6P9A3 640 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 ERMP1Q7Z2K6 904 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 LZTR1Q8N653 840 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 RIN3Q8TB24 985 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 RMDN1Q96DB5 314 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 UBXN10Q96LJ8 280 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 RNF145Q96MT1 663 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 ERVK-6Q9BXR3 956 aa12.11□□□□□ -0.47
CLIP3-201ENST00000360535 RALGAPA2Q2PPJ7 1873 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 GOLGA8CPA6NN73 597 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 ARPC2O15144 300 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 B4GAT1O43505 415 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CACNG3O60359 315 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 MRPS6P82932 125 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TRAP1Q12931 704 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 PTPRRQ15256 657 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TSNQ15631 228 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 NHSL2Q5HYW2 709 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 PAQR3Q6TCH7 311 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TRIM74Q86UV6 250 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TRIM73Q86UV7 250 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 EPHX4Q8IUS5 362 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 THEM5Q8N1Q8 247 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 THAP11Q96EK4 314 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 NAA50Q9GZZ1 169 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CCDC68Q9H2F9 335 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TUBB1Q9H4B7 451 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 POLR1BQ9H9Y6 1135 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 POLG2Q9UHN1 485 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 NUP214P35658 2090 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CDC7O00311 574 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 NR4A1P22736 598 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CPT1AP50416 773 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TBX4P57082 545 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 ADAM17P78536 824 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 MERTKQ12866 999 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 PCBP1Q15365 356 aaKnown RBP eCLIP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 ANKDD1AQ495B1 522 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CAMK1DQ8IU85 385 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 C12orf43Q96C57 262 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 LRRC58Q96CX6 371 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 MS4A4AQ96JQ5 239 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 PAIP1Q9H074 479 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 SCAMP3O14828 347 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 HOXD8P13378 290 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CD1DP15813 335 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 LBPP18428 481 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CDKN1CP49918 316 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 MLLT6P55198 1093 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 UFM1P61960 85 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF235Q14590 738 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 KCTD21Q4G0X4 260 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TMEM214Q6NUQ4 689 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 KLHL35Q6PF15 583 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 XKR5Q6UX68 686 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 KIAA0408Q6ZU52 694 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 FBXO39Q8N4B4 442 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 TTC9BQ8N6N2 239 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 PDZD8Q8NEN9 1154 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 IGSF8Q969P0 613 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 IMP4Q96G21 291 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 KCTD14Q9BQ13 255 aaPredicted RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 ACBD6Q9BR61 282 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 CSNK1G1Q9HCP0 422 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 BPIFA1Q9NP55 256 aa12.1□□□□□ -0.47
CLIP3-201ENST00000360535 DNAAF2Q9NVR5 837 aaKnown RBP12.1□□□□□ -0.47
CLIP3-201ENST00000360535 SNAP29O95721 258 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 SLC6A2P23975 617 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 OR1E1P30953 314 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 CDK9P50750 372 aaKnown RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 KCNK10P57789 538 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 POLD3Q15054 466 aaPredicted RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ADRM1Q16186 407 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PAGE3Q5JUK9 113 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 BRMS1LQ5PSV4 323 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 FAM45BPQ6NSW5 357 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PPP4R4Q6NUP7 873 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 TMEM26Q6ZUK4 368 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ZNF467Q7Z7K2 595 aaPredicted RBP12.09□□□□□ -0.47
CLIP3-201ENST00000360535 ANKRD23Q86SG2 305 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 PGBD5Q8N414 524 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 EFHBQ8N7U6 833 aa12.09□□□□□ -0.47
CLIP3-201ENST00000360535 FAM45AQ8TCE6 357 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms