RNA–Protein interactions for RNA: ENST00000357250.10

COL9A1-202, Transcript of collagen type IX alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL9A1, Length 4,761 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1-202ENST00000357250 MRPS23Q9Y3D9 190 aaKnown RBP11.73□□□□□ -0.53
COL9A1-202ENST00000357250 PCDHB9Q9Y5E1 797 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 ARFGEF2Q9Y6D5 1785 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP11.73□□□□□ -0.53
COL9A1-202ENST00000357250 A0A0J9YYE9 177 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 TRIM43BA6NCK2 446 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 HIST1H2ABP04908 130 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 GPIP06744 558 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 SLC35G4P0C7Q5 338 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 SLC6A2P23975 617 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 TPP2P29144 1249 aaPredicted RBP11.73□□□□□ -0.53
COL9A1-202ENST00000357250 CXCR3P49682 368 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 CES5AQ6NT32 575 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 AGMOQ6ZNB7 445 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 CHSY3Q70JA7 882 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 HIST3H2AQ7L7L0 130 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 C16orf62Q7Z3J2 963 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 SLCO2A1Q92959 643 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 HIST1H2ACQ93077 130 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 CXorf40BQ96DE9 158 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 ZHX1-C8orf76Q96EF9 292 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 BTBD9Q96Q07 612 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 WDR12Q9GZL7 423 aaKnown RBP11.73□□□□□ -0.53
COL9A1-202ENST00000357250 PDZD7Q9H5P4 517 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 ARL8BQ9NVJ2 186 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 AKAP7Q9P0M2 348 aaPredicted RBP11.73□□□□□ -0.53
COL9A1-202ENST00000357250 RAPGEFL1Q9UHV5 662 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 COG5Q9UP83 839 aa11.73□□□□□ -0.53
COL9A1-202ENST00000357250 SCAMP3O14828 347 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 FFAR3O14843 346 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 SYN3O14994 580 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 SNPHO15079 494 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 GRM6O15303 877 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 GPR42O15529 346 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CST3P01034 146 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ALOX5P09917 674 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 FGFR3P22607 806 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CAPN13Q6MZZ7 669 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 SERPINA13PQ6UXR4 307 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 SLC24A5Q71RS6 500 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 RD3Q7Z3Z2 195 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 OR8D1Q8WZ84 308 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 SPOCK2Q92563 424 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ROPN1LQ96C74 230 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 KCTD15Q96SI1 283 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 GOLGA2P5Q9HBQ8 144 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 BTRCQ9Y297 605 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 BTBD19C9JJ37 291 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 MATN3O15232 486 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 BUD23O43709 281 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CTSEP14091 401 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 PAX7P23759 505 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CLK3P49761 638 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 RPS6KA3P51812 740 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 HNRNPDQ14103 355 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 DGCR6Q14129 220 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ZNF846Q147U1 533 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CERCAMQ5T4B2 595 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 FAM220AQ7Z4H9 259 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ZC3H7AQ8IWR0 971 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 OR2T34Q8NGX1 318 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 OR2T3Q8NH03 318 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 DNAJB8Q8NHS0 232 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 PPCDCQ96CD2 204 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 MTFMTQ96DP5 389 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 TRIM8Q9BZR9 551 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 IGSF9Q9P2J2 1179 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 TCAF1Q9Y4C2 921 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 KLRG2A4D1S0 409 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CLDN5O00501 218 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 MFSD11O43934 449 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 NPHS1O60500 1241 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 PTGIRP43119 386 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 CACNG1Q06432 222 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 NOGQ13253 232 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 RGMBQ6NW40 437 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 SRFBP1Q8NEF9 429 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 GRIN3AQ8TCU5 1115 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 MARK4Q96L34 752 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 C12orf42Q96LP6 360 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 NUSAP1Q9BXS6 441 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 NMUR2Q9GZQ4 415 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 TRIT1Q9H3H1 467 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ZFYVE1Q9HBF4 777 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 C3orf14Q9HBI5 128 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 RPRD1BQ9NQG5 326 aaKnown RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 DNAJC11Q9NVH1 559 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 EHD3Q9NZN3 535 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 IFT80Q9P2H3 777 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 TRIM17Q9Y577 477 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ZNF142P52746 1687 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 KDM3BQ7LBC6 1761 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 PLIN3O60664 434 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 NBNO60934 754 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 LYPLA1O75608 230 aaPredicted RBP11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ZMPSTE24O75844 475 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 ADH1CP00326 375 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 LAG3P18627 525 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 EPORP19235 508 aa11.72□□□□□ -0.53
COL9A1-202ENST00000357250 GSSP48637 474 aa11.72□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms