RNA–Protein interactions for RNA: ENST00000353578.8

COL6A3-203, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 5 BASIC

Gene COL6A3, Length 9,963 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-203ENST00000353578 LYVE1Q9Y5Y7 322 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 TTC34A8MYJ7 566 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 DENRO43583 198 aaKnown RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 NDUFB5O43674 189 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 NUAK1O60285 661 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 DGKAP23743 735 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 CIB1Q99828 191 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 PBDC1Q9BVG4 233 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 LGR6Q9HBX8 967 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 TMEM184CQ9NVA4 438 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ETNK2Q9NVF9 386 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 PNPLA6Q8IY17 1366 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 CAPN15O75808 1086 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HOXA13P31271 388 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 PCDHGB7Q9Y5F8 929 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 FAM199XQ6PEV8 388 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 COPS4Q9BT78 406 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 FNDC11Q9BVV2 318 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 LMTK3Q96Q04 1460 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 COX7A2P14406 83 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF621Q6ZSS3 439 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 GPRIN3Q6ZVF9 776 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 LSM14AQ8ND56 463 aaKnown RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 NR4A3Q92570 626 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 GIMAP5Q96F15 307 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 KRBOX1C9JBD0 128 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HIST1H2ABP04908 130 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 AIF1P55008 147 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 RPP38P78345 283 aaKnown RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SUPT20HL1Q3ZLR7 823 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HYIQ5T013 277 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 KANK2Q63ZY3 851 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HIST3H2AQ7L7L0 130 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SLC22A16Q86VW1 577 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HIST1H2ACQ93077 130 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SPON2Q9BUD6 331 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ADAM33Q9BZ11 813 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 TUBB1Q9H4B7 451 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 DNPEPQ9ULA0 475 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 POMPQ9Y244 141 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SPAG17Q6Q759 2223 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ATP6AP2A0A1C7CYW4 349 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ENTPD6O75354 484 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SPIBQ01892 262 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ZIK1Q3SY52 487 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 UBXN11Q5T124 520 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 SPATA2LQ8IUW3 424 aaPredicted RBP12.59□□□□□ -0.39
COL6A3-203ENST00000353578 MARVELD2Q8N4S9 558 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 HSPA12BQ96MM6 686 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 ZNF670Q9BS34 389 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 AGXT2Q9BYV1 514 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 TAS2R9Q9NYW1 312 aa12.59□□□□□ -0.39
COL6A3-203ENST00000353578 LOC102724428A0A0B4J2F2 783 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 WDR27A2RRH5 827 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 ALDH4A1P30038 563 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 SIK1P57059 783 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 RAB11FIP2Q7L804 512 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 METTL3Q86U44 580 aaKnown RBP12.58□□□□□ -0.39
COL6A3-203ENST00000353578 HDAC2Q92769 488 aaKnown RBP12.58□□□□□ -0.39
COL6A3-203ENST00000353578 SLITRK1Q96PX8 696 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 CGRRF1Q99675 332 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 CADM1Q9BY67 442 aaKnown RBP12.58□□□□□ -0.39
COL6A3-203ENST00000353578 MYNNQ9NPC7 610 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 IFT52Q9Y366 437 aa12.58□□□□□ -0.39
COL6A3-203ENST00000353578 MAGEA6P43360 314 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 SLC13A2Q13183 592 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 AHSA2Q719I0 299 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 PDZD9Q8IXQ8 264 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 SLC44A1Q8WWI5 657 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 ZSWIM3Q96MP5 696 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 OXCT2Q9BYC2 517 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-203ENST00000353578 FAM126AQ9BYI3 521 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-203ENST00000353578 GIMAP1-GIMAP5A0A087WTJ2 511 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 L7N2F9 121 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 GRIN2DO15399 1336 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 GNAZP19086 355 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 MAPK8P45983 427 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.58□□□□□ -0.4
COL6A3-203ENST00000353578 OR7G1Q8NGA0 311 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 PCDH19Q8TAB3 1148 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 TBL1YQ9BQ87 522 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 GABBR1Q9UBS5 961 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 FBXO30Q8TB52 745 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 FAM50BQ9Y247 325 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 ATP6V1G2-DDX39BF2Z307 99 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 H7C1W4 665 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 PPM1BO75688 479 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF3P17036 446 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 MAPK10P53779 464 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 PTP4A2Q12974 167 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 DAW1Q8N136 415 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 PP2D1A8MPX8 630 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 PAPSS2O95340 614 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-203ENST00000353578 SHBGP04278 402 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 ECHS1P30084 290 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 AADACL4Q5VUY2 407 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 ADGRD1Q6QNK2 874 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 FAM198BQ6UWH4 519 aa12.58□□□□□ -0.4
COL6A3-203ENST00000353578 ZNF557Q8N988 423 aaPredicted RBP12.58□□□□□ -0.4
COL6A3-203ENST00000353578 EXO5Q9H790 373 aa12.58□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms