RNA–Protein interactions for RNA: ENST00000339872.8

HMGB1-202, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 2 BASIC

Gene HMGB1, Length 2,319 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-202ENST00000339872 ANKRD49Q8WVL7 239 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 ECHDC3Q96DC8 303 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TMEM120AQ9BXJ8 343 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 MRPL46Q9H2W6 279 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 OXSMQ9NWU1 459 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 VPS9D1Q9Y2B5 631 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 SLC30A1Q9Y6M5 507 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 KIF26AQ9ULI4 1882 aaPredicted RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 REV3LO60673 3130 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 PFDN6O15212 129 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 DCTN3O75935 186 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 UBOX5O94941 541 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 CISD3P0C7P0 127 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 ABCE1P61221 599 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 PDAP1Q13442 181 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 AARS2Q5JTZ9 985 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 KLC3Q6P597 504 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 TMEM207Q6UWW9 146 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 FAM151BQ6UXP7 276 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 NAPRTQ6XQN6 538 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 USP45Q70EL2 814 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 PPP4R1Q8TF05 950 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 SGF29Q96ES7 293 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 UBXN10Q96LJ8 280 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 ZNF641Q96N77 438 aaPredicted RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 MRPL57Q9BQC6 102 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 NSUN3Q9H649 340 aaKnown RBP13.35□□□□□ -0.27
HMGB1-202ENST00000339872 KCNK13Q9HB14 408 aa13.35□□□□□ -0.27
HMGB1-202ENST00000339872 OTOL1A6NHN0 477 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TARM1B6A8C7 271 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 RHOBTB1O94844 696 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 WISP3O95389 354 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 PRAMEF1O95521 474 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 ATP5BP06576 529 aaKnown RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 FCARP24071 287 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 ARRB2P32121 409 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 CORO7P57737 925 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TIAL1Q01085 375 aaKnown RBP eCLIP13.34□□□□□ -0.273e-6■■■■□ 21.9
HMGB1-202ENST00000339872 CACNG1Q06432 222 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 SETDB1Q15047 1291 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 CDKN3Q16667 212 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TECRLQ5HYJ1 363 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 LRRC73Q5JTD7 316 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 LIPMQ5VYY2 423 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 ANKRD54Q6NXT1 300 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 SYCE2Q6PIF2 218 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 GDPD4Q6W3E5 623 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 WFIKKN2Q8TEU8 576 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 FRS2Q8WU20 508 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TIFAQ96CG3 184 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 KLHL32Q96NJ5 620 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 LRRC37BQ96QE4 947 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 SLC8A2Q9UPR5 921 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 FAM50BQ9Y247 325 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 DNAJC16Q9Y2G8 782 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 COL4A3Q01955 1670 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 OR1I1O60431 355 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 H2AFYO75367 372 aaKnown RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 MESP2Q0VG99 397 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 PTPRNQ16849 979 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 LACTB2Q53H82 288 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TMEM184AQ6ZMB5 413 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TPRG1Q6ZUI0 275 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 ETFBKMTQ8IXQ9 262 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 GBP7Q8N8V2 638 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 OR6Y1Q8NGX8 325 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 TBRG4Q969Z0 631 aaKnown RBP eCLIP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 ERP27Q96DN0 273 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 SCRN2Q96FV2 425 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 LYSMD1Q96S90 227 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 SORT1Q99523 831 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 HEPHQ9BQS7 1158 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 GATA5Q9BWX5 397 aaPredicted RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 MTG2Q9H4K7 406 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 THG1LQ9NWX6 298 aaKnown RBP13.34□□□□□ -0.27
HMGB1-202ENST00000339872 KIAA1549LQ6ZVL6 1849 aa13.34□□□□□ -0.27
HMGB1-202ENST00000339872 WASH3PC4AMC7 463 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 DLX3O60479 287 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 HSPA4LO95757 839 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ASLP04424 464 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF37AP17032 561 aaPredicted RBP13.33□□□□□ -0.28
HMGB1-202ENST00000339872 SLC26A3P40879 764 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 SLC6A11P48066 632 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 SUOXP51687 545 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 KDSRQ06136 332 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 CCDC15Q0P6D6 951 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ACAP2Q15057 778 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 LRRC66Q68CR7 880 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 TANGO2Q6ICL3 276 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 CRTC1Q6UUV9 634 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ATG14Q6ZNE5 492 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 PLPP6Q8IY26 295 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ZNF366Q8N895 744 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 PIWIL2Q8TC59 973 aaKnown RBP13.33□□□□□ -0.28
HMGB1-202ENST00000339872 BIRC8Q96P09 236 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 MYLK2Q9H1R3 596 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 TRPV4Q9HBA0 871 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 POPDC3Q9HBV1 291 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ZFP14Q9HCL3 533 aa13.33□□□□□ -0.28
HMGB1-202ENST00000339872 ACSS2Q9NR19 701 aa13.33□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms