RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 NLRP8Q86W28 1048 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 RAVER1Q8IY67 606 aaKnown RBP15.78■□□□□ 0.12
CLN3-201ENST00000333496 C17orf53Q8N3J3 647 aaPredicted RBP15.78■□□□□ 0.12
CLN3-201ENST00000333496 FAM181AQ8N9Y4 354 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 AP2M1Q96CW1 435 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 MRGPRX2Q96LB1 330 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 GORASP1Q9BQQ3 440 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 DUSP23Q9BVJ7 150 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 USP29Q9HBJ7 922 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 TRHDEQ9UKU6 1024 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 PCDHGA1Q9Y5H4 931 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 DGKBQ9Y6T7 804 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 KNTC1P50748 2209 aa15.78■□□□□ 0.12
CLN3-201ENST00000333496 COL27A1Q8IZC6 1860 aaPredicted RBP15.77■□□□□ 0.12
CLN3-201ENST00000333496 LOC285095A0A1B0GVY8 99 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 GOLGA6CA6NDK9 693 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 GOLGA6BA6NDN3 693 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 LMO7DNF2Z398 122 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 TPP1O14773 563 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 TNFRSF10CO14798 259 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 RFPL3O75679 317 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 RASGRP1O95267 797 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 NDST3O95803 873 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 GOLGA6DP0CG33 693 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 ALPPL2P10696 532 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 SPINT3P49223 89 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 WNT3AP56704 352 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 TCEA2Q15560 299 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 GLIPR1L2Q4G1C9 344 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 NRSN1Q8IZ57 195 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 ATL2Q8NHH9 583 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 PTCD2Q8WV60 388 aaKnown RBP15.77■□□□□ 0.12
CLN3-201ENST00000333496 CNTNAP3BQ96NU0 1288 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 TMEM121BQ9BXQ6 578 aaPredicted RBP15.77■□□□□ 0.12
CLN3-201ENST00000333496 CNTNAP3Q9BZ76 1288 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 MAGEE1Q9HCI5 957 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 GOLGA6AQ9NYA3 693 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 SHOC2Q9UQ13 582 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 NEUROG3Q9Y4Z2 214 aa15.77■□□□□ 0.12
CLN3-201ENST00000333496 YY2O15391 372 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 KCNN4O15554 427 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CEACAM5P06731 702 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CKMT1AP12532 417 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 KELP23276 732 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 GPR1P46091 355 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ANKRD20A2Q5SQ80 823 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 HENMT1Q5T8I9 393 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 MEI1Q5TIA1 1274 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ANKRD20A1Q5TYW2 823 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ANKRD20A3Q5VUR7 823 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ZCCHC8Q6NZY4 707 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 DARS2Q6PI48 645 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 TMPRSS7Q7RTY8 843 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CDKL3Q8IVW4 592 aaPredicted RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 RIOK2Q9BVS4 552 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 BOCQ9BWV1 1114 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 FRMD8Q9BZ67 464 aaPredicted RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 GBA3Q9H227 469 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ZFYVE1Q9HBF4 777 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 PHPT1Q9NRX4 125 aaPredicted RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 RSPH14Q9UHP6 348 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 R3HDM2Q9Y2K5 976 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 MSRB2Q9Y3D2 182 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 SPO11Q9Y5K1 396 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 TPRP12270 2363 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 PRSS38A1L453 326 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 AURKAO14965 403 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 TNFP01375 233 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CTSEP14091 401 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CHRNA4P43681 627 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CLDN6P56747 220 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 SMAD1Q15797 465 aaKnown RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 TMC3Q7Z5M5 1100 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 MARCH9Q86YJ5 346 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 FSTL5Q8N475 847 aaPredicted RBP15.76■□□□□ 0.11
CLN3-201ENST00000333496 GATA6Q92908 595 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 TMEM168Q9H0V1 697 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 CYP4F12Q9HCS2 524 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 PPP2R2CQ9Y2T4 447 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ZNF711Q9Y462 761 aa15.76■□□□□ 0.11
CLN3-201ENST00000333496 ZNF106Q9H2Y7 1883 aaKnown RBP15.75■□□□□ 0.11
CLN3-201ENST00000333496 GOLGA6L9A6NEM1 432 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 PDE2AO00408 941 aaPredicted RBP15.75■□□□□ 0.11
CLN3-201ENST00000333496 EPOP01588 193 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 POLD2P49005 469 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 DAB2P98082 770 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 MPP3Q13368 585 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 ELOCQ15369 112 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 SIRPB2Q5JXA9 342 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 C6orf132Q5T0Z8 1188 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 ADAMTSL4Q6UY14 1074 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 TTC13Q8NBP0 860 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 IPMKQ8NFU5 416 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 CCL4L1Q8NHW4 92 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 SLC35B2Q8TB61 432 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 CCDC110Q8TBZ0 833 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 CCHCR1Q8TD31 782 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 UBE2Q2Q8WVN8 375 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 COX14Q96I36 57 aa15.75■□□□□ 0.11
CLN3-201ENST00000333496 KCND1Q9NSA2 647 aa15.75■□□□□ 0.11
Retrieved 100 of 20,778 RNA–protein pairs in 34.9 ms