RNA–Protein interactions for RNA: ENST00000318006.9

VPS39-201, Transcript of VPS39, HOPS complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS39, Length 4,844 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-201ENST00000318006 PHC1P78364 1004 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PLD1Q13393 1074 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 RUNDC3AQ59EK9 446 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 GLYATQ6IB77 296 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 LCLAT1Q6UWP7 414 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PIK3R3Q92569 461 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 NKD2Q969F2 451 aaPredicted RBP11.49□□□□□ -0.57
VPS39-201ENST00000318006 DUSP16Q9BY84 665 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TRPV5Q9NQA5 729 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CATSPERZQ9NTU4 200 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 OGDHLQ9ULD0 1010 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP11.49□□□□□ -0.57
VPS39-201ENST00000318006 FAM50BQ9Y247 325 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 SLC9A8Q9Y2E8 581 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ROBO1Q9Y6N7 1651 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A9O60656 530 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 C2P06681 752 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 DARSP14868 501 aaKnown RBP11.49□□□□□ -0.57
VPS39-201ENST00000318006 TCF4P15884 667 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A6P19224 532 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 NFKB1P19838 968 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A1P22309 533 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A4P22310 534 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A3P35503 534 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A5P35504 534 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TGFBR2P37173 567 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 MTHFRP42898 656 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 FAM110CQ1W6H9 321 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PPM1LQ5SGD2 360 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 C6orf183Q5T699 404 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 C9orf57Q5W0N0 161 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PRR23BQ6ZRT6 265 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ARMC8Q8IUR7 673 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PHF10Q8WUB8 498 aaKnown RBP11.49□□□□□ -0.57
VPS39-201ENST00000318006 SELENOMQ8WWX9 145 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TMCO6Q96DC7 493 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A7Q9HAW7 530 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A10Q9HAW8 530 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UGT1A8Q9HAW9 530 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 DPP7Q9UHL4 492 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PDE10AQ9Y233 779 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 SPEF2Q9C093 1822 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 FAM149AA5PLN7 773 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 KCNU1A8MYU2 1149 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 M0R2N6 131 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 SPTLC1O15269 473 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CKBP12277 381 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CD52P31358 61 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ALDH9A1P49189 494 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ZBED5Q49AG3 693 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 STXBP5Q5T5C0 1151 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PHF12Q96QT6 1004 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CPXM1Q96SM3 734 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 FAM126AQ9BYI3 521 aaPredicted RBP11.49□□□□□ -0.57
VPS39-201ENST00000318006 FAM105AQ9NUU6 356 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TMEM39AQ9NV64 488 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PCDHGC3Q9UN70 934 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 SLIT2O94813 1529 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ATRNL1Q5VV63 1379 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TSPAN4O14817 238 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 NDUFS2O75306 463 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CILPO75339 1184 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 MMP3P08254 477 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CRATP43155 626 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 RFX3P48380 749 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ELP6Q0PNE2 266 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 FSTL1Q12841 308 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 FASTKD3Q14CZ7 662 aaKnown RBP11.49□□□□□ -0.57
VPS39-201ENST00000318006 NOMO2Q5JPE7 1267 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 VWA5B1Q5TIE3 1220 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 RGMBQ6NW40 437 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 GPRIN3Q6ZVF9 776 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 UBR7Q8N806 425 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 BANPQ8N9N5 519 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 TRPV1Q8NER1 839 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 MCOLN3Q8TDD5 553 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 CPT1BQ92523 772 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 HSPBAP1Q96EW2 488 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 LGMNQ99538 433 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 ADGRE2Q9UHX3 823 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 PCDHGA3Q9Y5H0 932 aa11.49□□□□□ -0.57
VPS39-201ENST00000318006 VIRMAQ69YN4 1812 aaKnown RBP11.49□□□□□ -0.57
VPS39-201ENST00000318006 NOTOA8MTQ0 251 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 CLDN5O00501 218 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 AIREO43918 545 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 TCEA3O75764 348 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 FAM155BO75949 473 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 NTRK1P04629 796 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 WEE1P30291 646 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 WDR4P57081 412 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 ZNF280AP59817 542 aaPredicted RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 NCCRP1Q6ZVX7 275 aaPredicted RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 FAM35AQ86V20 835 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 RBM12BQ8IXT5 1001 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 CPSF7Q8N684 471 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 CDYL2Q8N8U2 506 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 RHOJQ9H4E5 214 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 KAT8Q9H7Z6 458 aaKnown RBP11.48□□□□□ -0.57
VPS39-201ENST00000318006 PCDH18Q9HCL0 1135 aa11.48□□□□□ -0.57
VPS39-201ENST00000318006 CORO2BQ9UQ03 480 aa11.48□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 81.4 ms