RNA–Protein interactions for RNA: ENST00000316433.8

ZNF540-201, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene ZNF540, Length 3,099 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-201ENST00000316433 TNK2Q07912 1038 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 SEMA5AQ13591 1074 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 MTMR1Q13613 665 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 FASTKD3Q14CZ7 662 aaKnown RBP6.65□□□□□ -1.35
ZNF540-201ENST00000316433 HIST2H2ACQ16777 129 aaPredicted RBP6.65□□□□□ -1.35
ZNF540-201ENST00000316433 ANKRD39Q53RE8 183 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 MAMDC4Q6UXC1 1216 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 DPY19L3Q6ZPD9 716 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 DPP9Q86TI2 863 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 TBC1D21Q8IYX1 336 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 DSELQ8IZU8 1212 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 CELF2-AS1Q8N7Q2 184 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 ATG4AQ8WYN0 398 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 CENPIQ92674 756 aaPredicted RBP6.65□□□□□ -1.35
ZNF540-201ENST00000316433 FAM167AQ96KS9 214 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 RTKNQ9BST9 563 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 NIF3L1Q9GZT8 377 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 C2orf40Q9H1Z8 148 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 PPA2Q9H2U2 334 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 B3GNT2Q9NY97 397 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 MBD2Q9UBB5 411 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 TINAGQ9UJW2 476 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 SARDHQ9UL12 918 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 RPH3AQ9Y2J0 694 aaPredicted RBP6.65□□□□□ -1.35
ZNF540-201ENST00000316433 PCDHGA7Q9Y5G6 932 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 CSNK1G3Q9Y6M4 447 aa6.65□□□□□ -1.35
ZNF540-201ENST00000316433 SH3D21A4FU49 640 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ZBBXA8MT70 800 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 A8MV72 311 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 I3L521 148 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ABCB7O75027 752 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 UGT2B11O75310 529 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 PPM1BO75688 479 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 BCAS2O75934 225 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 CCNE2O96020 404 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MT-ND3P03897 115 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 COX4I1P13073 169 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 PSMA4P25789 261 aaKnown RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 EPHX2P34913 555 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 SERPINB10P48595 397 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 SEPHS1P49903 392 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 HLCSP50747 726 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 AP1S2P56377 157 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 NME5P56597 212 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ACTR2P61160 394 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 JAG1P78504 1218 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 PCBP1Q15365 356 aaKnown RBP eCLIP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 HADHQ16836 314 aaKnown RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MTX3Q5HYI7 312 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ZBTB41Q5SVQ8 909 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 LETMD1Q6P1Q0 360 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 CRTC3Q6UUV7 619 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ZBTB44Q8NCP5 570 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 LRTOMTQ8WZ04 291 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 AKAP1Q92667 903 aaKnown RBP eCLIP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ZNF395Q9H8N7 513 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 SPC25Q9HBM1 224 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 IFT46Q9NQC8 304 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 COL20A1Q9P218 1284 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 DNPEPQ9ULA0 475 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 PRELID3BQ9Y3B1 194 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 COL1A2P08123 1366 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 LTBP3Q9NS15 1303 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 E2F3O00716 465 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 GSRP00390 522 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 HOXD4P09016 255 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 IL7P13232 177 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 KDELR1P24390 212 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 GNA15P30679 374 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 POLR2IP36954 125 aaKnown RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 HSPA2P54652 639 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ARPP19P56211 112 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MS4A2Q01362 244 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 TEKQ02763 1124 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 KRR1Q13601 381 aaKnown RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 RIN1Q13671 783 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 CHI3L2Q15782 390 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 DDR2Q16832 855 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 PIGGQ5H8A4 983 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 STEAP3Q658P3 488 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 RSBN1LQ6PCB5 846 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ABRAXAS1Q6UWZ7 409 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 RANBP10Q6VN20 620 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 ZBTB49Q6ZSB9 765 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 SPATC1Q76KD6 591 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 HDDC2Q7Z4H3 204 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 VN1R5Q7Z5H4 357 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 TSPYL5Q86VY4 417 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 UBQLNLQ8IYU4 475 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 PIK3C3Q8NEB9 887 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 RHOXF1Q8NHV9 184 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 KAT5Q92993 513 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MSANTD3Q96H12 275 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 BTN2A3PQ96KV6 586 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MLPHQ9BV36 600 aaPredicted RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MECRQ9BV79 373 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 LHPPQ9H008 270 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 POPDC2Q9HBU9 364 aa6.64□□□□□ -1.35
ZNF540-201ENST00000316433 APOBEC3GQ9HC16 384 aaKnown RBP6.64□□□□□ -1.35
ZNF540-201ENST00000316433 MORF4L1Q9UBU8 362 aa6.64□□□□□ -1.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms