RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 FERP16591 822 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 NOP2P46087 812 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 OGDHQ02218 1023 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 MAMLD1Q13495 774 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 PPP6R3Q5H9R7 873 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 DENND2CQ68D51 928 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 WDR74Q6RFH5 385 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 CEACAM20Q6UY09 585 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 ADAMTSL4Q6UY14 1074 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 PTRH1Q86Y79 214 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 NRSN1Q8IZ57 195 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 C9orf43Q8TAL5 461 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 FNIP1Q8TF40 1166 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 NSMCE1Q8WV22 266 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 PATE1Q8WXA2 126 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 MCCC1Q96RQ3 725 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 KCTD15Q96SI1 283 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 SLC38A3Q99624 504 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 EPN3Q9H201 632 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 STN1Q9H668 368 aaKnown RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 GPN2Q9H9Y4 310 aaPredicted RBP14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 PCSK1NQ9UHG2 260 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 PILRAQ9UKJ1 303 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 PCDHGC4Q9Y5F7 938 aa14.72□□□□□ -0.05
CCDC88B-201ENST00000301897 RELNP78509 3460 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 LGALS16A8MUM7 142 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 CR2P20023 1033 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 CSF2RBP32927 897 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 GPR1P46091 355 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 PPM1FP49593 454 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 COPB1P53618 953 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 FOXK1P85037 733 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 SLC10A7Q0GE19 358 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 ABHD18Q0P651 414 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 DPYSQ14117 519 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 CA9Q16790 459 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 CRTC2Q53ET0 693 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 ARMC12Q5T9G4 340 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 NKAIN2Q5VXU1 208 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 PLEKHA7Q6IQ23 1121 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 ARHGAP36Q6ZRI8 547 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 Q6ZVL8 140 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 HSD11B1LQ7Z5J1 315 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 NLRP8Q86W28 1048 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 NLGN4XQ8N0W4 816 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 NPWQ8N729 165 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 NLGN4YQ8NFZ3 816 aaPredicted RBP14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 APOBEC4Q8WW27 367 aaKnown RBP14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 PMEPA1Q969W9 287 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 SH3KBP1Q96B97 665 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 ERGIC2Q96RQ1 377 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 MGME1Q9BQP7 344 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 DNPEPQ9ULA0 475 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 PPIL1Q9Y3C6 166 aa14.71□□□□□ -0.05
CCDC88B-201ENST00000301897 H3BRJ5 948 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 PGLSO95336 258 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 GP1BBP13224 206 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 ZNF30P17039 623 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 TNFAIP3P21580 790 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 LHCGRP22888 699 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 MIPP30301 263 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 ARL4AP40617 200 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 MC2RQ01718 297 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 UBXN1Q04323 297 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 SEPT6Q14141 434 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 SKIDA1Q1XH10 827 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 ZNF765Q7L2R6 523 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 GALNT13Q8IUC8 556 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 RAVER1Q8IY67 606 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 SFRP1Q8N474 314 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 BMPERQ8N8U9 685 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 AVL9Q8NBF6 648 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 RTP4Q96DX8 246 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 NSMCE3Q96MG7 304 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 PEBP4Q96S96 227 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 EPB41L1Q9H4G0 881 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 NOD2Q9HC29 1040 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 FBXO8Q9NRD0 319 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 OCIAD1Q9NX40 245 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 CHMP5Q9NZZ3 219 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 CWC15Q9P013 229 aaKnown RBP14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 MYO6Q9UM54 1294 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 ST14Q9Y5Y6 855 aa14.7□□□□□ -0.06
CCDC88B-201ENST00000301897 TMEM191CA6NGB0 347 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 NPIPB15A6NHN6 443 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 SLC2A4P14672 509 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 SERPINB6P35237 376 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 POLD2P49005 469 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 CDH6P55285 790 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 CDC20Q12834 499 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 PYCR3Q53H96 274 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 CHCHD2P9Q5T1J5 151 aaPredicted RBP14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 MARC1Q5VT66 337 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 ANKS6Q68DC2 871 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 DOK6Q6PKX4 331 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 TMCO3Q6UWJ1 677 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 ARHGAP22Q7Z5H3 698 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 TECPR1Q7Z6L1 1165 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 LRRC49Q8IUZ0 686 aa14.69□□□□□ -0.06
CCDC88B-201ENST00000301897 ATPAF2Q8N5M1 289 aa14.69□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms