RNA–Protein interactions for RNA: ENST00000260130.8

SDCBP-201, Transcript of syndecan binding protein, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene SDCBP, Length 2,167 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-201ENST00000260130 PRAMEF14Q5SWL7 426 aa16.76■□□□□ 0.27
SDCBP-201ENST00000260130 LRRC66Q68CR7 880 aa16.76■□□□□ 0.27
SDCBP-201ENST00000260130 TTC19Q6DKK2 380 aaPredicted RBP16.76■□□□□ 0.27
SDCBP-201ENST00000260130 MAATS1Q7Z4T9 603 aa16.76■□□□□ 0.27
SDCBP-201ENST00000260130 HSD11B1LQ7Z5J1 315 aa16.76■□□□□ 0.27
SDCBP-201ENST00000260130 ELF4Q99607 663 aaPredicted RBP16.76■□□□□ 0.27
SDCBP-201ENST00000260130 KCTD5Q9NXV2 234 aa16.76■□□□□ 0.27
SDCBP-201ENST00000260130 FNDC3AQ9Y2H6 1198 aaKnown RBP16.76■□□□□ 0.27
SDCBP-201ENST00000260130 CEP250Q9BV73 2442 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 A0A0U1RQS6 177 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 LOC285095A0A1B0GVY8 99 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 ATP1A2P50993 1020 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 SLC14A1Q13336 389 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 PACS2Q86VP3 889 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 MRGPRX2Q96LB1 330 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 RTKNQ9BST9 563 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 TM7SF3Q9NS93 570 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 ZNF148Q9UQR1 794 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 PLAAQ9Y263 795 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 ADAMTS9Q9P2N4 1935 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 SRRM3A6NNA2 597 aaPredicted RBP16.75■□□□□ 0.27
SDCBP-201ENST00000260130 TM4SF5O14894 197 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 GCATO75600 419 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 ZNF883P0CG24 379 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 GEMP55040 296 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 GDF10P55107 478 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 YPEL5P62699 121 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 SNX1Q13596 522 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 PRPSAP1Q14558 356 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 CCNG2Q16589 344 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 SLC22A18ASQ8N1D0 253 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 ARFGAP2Q8N6H7 521 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 EPN3Q9H201 632 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 GPR27Q9NS67 375 aa16.75■□□□□ 0.27
SDCBP-201ENST00000260130 AAR2Q9Y312 384 aaKnown RBP16.75■□□□□ 0.27
SDCBP-201ENST00000260130 TOR1BO14657 336 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 CLDN7O95471 211 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 PSMB4P28070 264 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 LSP1P33241 339 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 ETV3P41162 512 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 INPP5AQ14642 412 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 CDKN3Q16667 212 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 CEP85LQ5SZL2 805 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 ARHGEF18Q6ZSZ5 1173 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 Q6ZVL8 140 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 RASGEF1CQ8N431 466 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 OXR1Q8N573 874 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 IPMKQ8NFU5 416 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 NUS1Q96E22 293 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 DTD2Q96FN9 168 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 PPP1R2P1Q96PQ5 205 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 GORASP1Q9BQQ3 440 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 TMBIM4Q9HC24 238 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 MAGEE1Q9HCI5 957 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 KNL1Q8NG31 2342 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 C1orf232A0A0U1RR37 186 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 A0A1B0GTQ1 180 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 BHMG1C9JSJ3 638 aaPredicted RBP16.74■□□□□ 0.27
SDCBP-201ENST00000260130 PCCBP05166 539 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 ARRB1P49407 418 aaPredicted RBP16.74■□□□□ 0.27
SDCBP-201ENST00000260130 PDE1CQ14123 709 aaPredicted RBP16.74■□□□□ 0.27
SDCBP-201ENST00000260130 PARP6Q2NL67 630 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 DRICH1Q6PGQ1 229 aaPredicted RBP16.74■□□□□ 0.27
SDCBP-201ENST00000260130 MICALCLQ6ZW33 695 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 TECPR1Q7Z6L1 1165 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 PLA2G15Q8NCC3 412 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 RTP4Q96DX8 246 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 SRPK1Q96SB4 655 aaKnown RBP16.74■□□□□ 0.27
SDCBP-201ENST00000260130 FSD1LQ9BXM9 530 aa16.74■□□□□ 0.27
SDCBP-201ENST00000260130 SPTY2D1-AS1A0A0U1RR47 76 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 ITGAVP06756 1048 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 MYZAPP0CAP1 466 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 ID4P47928 161 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 RXRGP48443 463 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 CCT8P50990 548 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 STC1P52823 247 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 THOP1P52888 689 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 MTM1Q13496 603 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 PUM1Q14671 1186 aaKnown RBP eCLIP16.73■□□□□ 0.27
SDCBP-201ENST00000260130 TRADDQ15628 312 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 RAVER1Q8IY67 606 aaKnown RBP16.73■□□□□ 0.27
SDCBP-201ENST00000260130 CCHCR1Q8TD31 782 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 RABEP2Q9H5N1 569 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 HOMER3Q9NSC5 361 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 TTC7AQ9ULT0 858 aaPredicted RBP16.73■□□□□ 0.27
SDCBP-201ENST00000260130 DRG1Q9Y295 367 aaKnown RBP16.73■□□□□ 0.27
SDCBP-201ENST00000260130 PCDHGB2Q9Y5G2 931 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 DCHS1Q96JQ0 3298 aa16.73■□□□□ 0.27
SDCBP-201ENST00000260130 KIAA0754O94854 1291 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 C1SP09871 688 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 ATXN1LP0C7T5 689 aaKnown RBP16.72■□□□□ 0.27
SDCBP-201ENST00000260130 PIRTP0C851 137 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 CD59P13987 128 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 HSD17B3P37058 310 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 MDH1P40925 334 aaKnown RBP16.72■□□□□ 0.27
SDCBP-201ENST00000260130 PTK2BQ14289 1009 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 FZD2Q14332 565 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 SUZ12Q15022 739 aaKnown RBP16.72■□□□□ 0.27
SDCBP-201ENST00000260130 SLC1A5Q15758 541 aa16.72■□□□□ 0.27
SDCBP-201ENST00000260130 P3H1Q32P28 736 aa16.72■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms