RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 FGF1P05230 155 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 CAPN3P20807 821 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 GPR15P49685 360 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 FOXA1P55317 472 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 GRB7Q14451 532 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 PTPRCAPQ14761 206 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 FBXL22Q6P050 247 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 AQP12AQ8IXF9 295 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 DCP1BQ8IZD4 617 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 MINDY1Q8N5J2 469 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 GPR150Q8NGU9 434 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 EZH1Q92800 747 aaPredicted RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 PEX13Q92968 403 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 TBRG4Q969Z0 631 aaKnown RBP eCLIP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 BTN2A3PQ96KV6 586 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 NSUN5Q96P11 429 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 CATSPERZQ9NTU4 200 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 RSL24D1Q9UHA3 163 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 MYO16Q9Y6X6 1858 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 IGLV3-10A0A075B6K4 115 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 DHRS12A0PJE2 317 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 SAC3D1A6NKF1 404 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 HNRNPRO43390 633 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 RPLP2P05387 115 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 LBPP18428 481 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 IL10P22301 178 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 PSMA4P25789 261 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 PBX3P40426 434 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 SUOXP51687 545 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 TIAL1Q01085 375 aaKnown RBP eCLIP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 BNIP2Q12982 314 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 ZNF235Q14590 738 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 NHSL2Q5HYW2 709 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 SPPL2CQ8IUH8 684 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 OR13C4Q8NGS5 318 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 FEM1CQ96JP0 617 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 RPRD1AQ96P16 312 aaPredicted RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 KCNA7Q96RP8 456 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 TFB2MQ9H5Q4 396 aaKnown RBP18.68■□□□□ 0.58
CPSF3-201ENST00000238112 OLAHQ9NV23 265 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 EGFL7Q9UHF1 273 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 SQORQ9Y6N5 450 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 DNAH12Q6ZR08 3092 aa18.68■□□□□ 0.58
CPSF3-201ENST00000238112 FAM155AB1AL88 458 aaPredicted RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 CRCPO75575 148 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 TRMUO75648 421 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 GJB3O75712 270 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 MTHFD2P13995 350 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 HGFP14210 728 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 SLC5A2P31639 672 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 PLOD1Q02809 727 aaPredicted RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 GALNT3Q14435 633 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 CAPRIN1Q14444 709 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 SEMA3AQ14563 771 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 DSC3Q14574 896 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 TAF1CQ15572 869 aaPredicted RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 PARP15Q460N3 678 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 CIR1Q86X95 450 aaPredicted RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 MIB1Q86YT6 1006 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 SLC15A3Q8IY34 581 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 OR4L1Q8NH43 312 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 ZNF512Q96ME7 567 aaPredicted RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 CLK4Q9HAZ1 481 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 TIMMDC1Q9NPL8 285 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 DUS2Q9NX74 493 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 SUPT3HB4E1H0 165 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 C9JVG2 144 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 H3BMM5 538 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 CLASP2O75122 1294 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 SUPT3HO75486 399 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 LINC00032P0C843 101 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 HSD17B1P14061 328 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 OGNP20774 298 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 SERINC3Q13530 473 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 CAMK1DQ8IU85 385 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 PHYKPLQ8IUZ5 450 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 PACRGLQ8N7B6 248 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 FAM47BQ8NA70 645 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 FAM110BQ8TC76 370 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 HM13Q8TCT9 377 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 BRSK1Q8TDC3 778 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 DIS3LQ8TF46 1054 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 ATOH8Q96SQ7 321 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 AARSD1Q9BTE6 412 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 POLG2Q9UHN1 485 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 RNF112Q9ULX5 631 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 BTRCQ9Y297 605 aa18.67■□□□□ 0.58
CPSF3-201ENST00000238112 TDRD15B5MCY1 1934 aaKnown RBP18.67■□□□□ 0.58
CPSF3-201ENST00000238112 TTC3P53804 2025 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 MATN4O95460 622 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 TBX18O95935 607 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 PIRTP0C851 137 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 IDO1P14902 403 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 PCSK6P29122 969 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 EEF1DP29692 281 aaKnown RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 OR1E1P30953 314 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 GRK4P32298 578 aa18.66■□□□□ 0.58
CPSF3-201ENST00000238112 NFE2Q16621 373 aaPredicted RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 PABPC1LQ4VXU2 614 aaKnown RBP18.66■□□□□ 0.58
CPSF3-201ENST00000238112 SOCS4Q8WXH5 440 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 108.9 ms