RNA–Protein interactions for RNA: ENST00000641575.1

SCN1A-219, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS ALT1 BASIC

Gene SCN1A, Length 12,874 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-219ENST00000641575 O00370 1275 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OR10H2O60403 315 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ULK1O75385 1050 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IL18RAPO95256 599 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 AGTP01019 485 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IFNA7P01567 189 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ITGB3P05106 788 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CYP2E1P05181 493 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OXTRP30559 389 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GRK5P34947 590 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ALDH9A1P49189 494 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 HK2P52789 917 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 KCNJ2P63252 427 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PHC1P78364 1004 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MPP3Q13368 585 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CCNYL2Q5T2Q4 361 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LLGL2Q6P1M3 1020 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IZUMO2Q6UXV1 221 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RBM43Q6ZSC3 357 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CLVS1Q8IUQ0 354 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IQCF2Q8IXL9 164 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ATL1Q8WXF7 558 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ALG3Q92685 438 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FGGYQ96C11 551 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CNOT6LQ96LI5 555 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MBOAT7Q96N66 472 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 KLHL5Q96PQ7 755 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZSCAN10Q96SZ4 725 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 APOL2Q9BQE5 337 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 TMEM121Q9BTD3 319 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CLPBQ9H078 707 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 POLR3FQ9H1D9 316 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PSMC3IPQ9P2W1 217 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MTRRQ9UBK8 725 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PCDHGA2Q9Y5H1 932 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 URB2Q14146 1524 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 A0A1W2PQ27 194 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 A0A1W2PQ64 194 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 A0A1W2PQD8 194 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FPGTO14772 594 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 DFNA5O60443 496 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IL33O95760 270 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 IGHDP01880 384 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 LAG3P18627 525 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FGFR4P22455 802 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 POU1F1P28069 291 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 VIPR1P32241 457 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ERFP50548 548 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 NUDT2P50583 147 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 EEFSECP57772 596 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OVGP1Q12889 678 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PSMD5Q16401 504 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM26FQ5R3K3 315 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CWF19L1Q69YN2 538 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZBTB49Q6ZSB9 765 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF589Q86UQ0 364 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MON1AQ86VX9 555 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 OR8D1Q8WZ84 308 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MYDGFQ969H8 173 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CHCHD6Q9BRQ6 235 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 DCLRE1BQ9H816 532 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MARCH7Q9H992 704 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GDAQ9Y2T3 454 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PCYT1BQ9Y5K3 369 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CEP170BQ9Y4F5 1589 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ERVV-1B6SEH8 477 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 BTBD19C9JJ37 291 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SLC27A2O14975 620 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CASC3O15234 703 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CDH16O75309 829 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 B3GAT3O94766 335 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GLCEO94923 617 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF7P17097 686 aaPredicted RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SLC7A1P30825 629 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GP5P40197 560 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FXR1P51114 621 aaKnown RBP eCLIP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CTSWP56202 376 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 GRIK3Q13003 919 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SNAPC1Q16533 368 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ATF7IP2Q5U623 682 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 DENND5AQ6IQ26 1287 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SLC25A25Q6KCM7 469 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM20CQ8IXL6 584 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MYO1HQ8N1T3 1032 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FAM172AQ8WUF8 416 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MKL1Q969V6 931 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MSTO1Q9BUK6 570 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 RERGLQ9H628 205 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 CCDC86Q9H6F5 360 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ACSS2Q9NR19 701 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FARSBQ9NSD9 589 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 REXO2Q9Y3B8 237 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 ZNF780BQ9Y6R6 833 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MAU2Q9Y6X3 613 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 PCF11O94913 1555 aaKnown RBP2.78□□□□□ -1.96
SCN1A-219ENST00000641575 FCHO1O14526 889 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MYL12BO14950 172 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 SCAMP1O15126 338 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MUSKO15146 869 aa2.78□□□□□ -1.96
SCN1A-219ENST00000641575 MAFKO60675 156 aa2.78□□□□□ -1.96
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms