RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 DPTQ07507 201 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 TARDBPQ13148 414 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-260ENST00000637578 ELOCQ15369 112 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 CDCP2Q5VXM1 449 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 CRTC1Q6UUV9 634 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 Q6ZVL8 140 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 NLRP8Q86W28 1048 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 RFX6Q8HWS3 928 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 RAVER1Q8IY67 606 aaKnown RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 OR56A4Q8NGH8 313 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 LYSMD1Q96S90 227 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 RBM15Q96T37 977 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-260ENST00000637578 TEX101Q9BY14 249 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 CCDC86Q9H6F5 360 aaKnown RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 PACSIN2Q9UNF0 486 aaPredicted RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 CHKBQ9Y259 395 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 USP27XA6NNY8 438 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 OPA1O60313 960 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 ANXA6P08133 673 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 CELA2BP08218 269 aaPredicted RBP19.23■□□□□ 0.67
CLN3-260ENST00000637578 ZNF30P17039 623 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 KELP23276 732 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 SKOR1P84550 965 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 ARHGEF7Q14155 803 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 KATNAL2Q8IYT4 538 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-260ENST00000637578 OR1E3Q8WZA6 343 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 PDXPQ96GD0 296 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 ALS2CR12Q96Q35 445 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 SMIM14Q96QK8 99 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 WDR26Q9H7D7 661 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 FGF22Q9HCT0 170 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 SBDSQ9Y3A5 250 aaKnown RBP eCLIP19.23■□□□□ 0.67
CLN3-260ENST00000637578 TTLL3Q9Y4R7 772 aa19.23■□□□□ 0.67
CLN3-260ENST00000637578 PPP1R12AO14974 1030 aaPredicted RBP19.22■□□□□ 0.67
CLN3-260ENST00000637578 TNFP01375 233 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 MYCLP1P12525 358 aaPredicted RBP19.22■□□□□ 0.67
CLN3-260ENST00000637578 CA4P22748 312 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 CTNNA2P26232 953 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 AP1B1Q10567 949 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 TFDP2Q14188 446 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 ODF2Q5BJF6 829 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 LRRC66Q68CR7 880 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 SPOCD1Q6ZMY3 1216 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 SLC35F3Q8IY50 421 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 RCOR2Q8IZ40 523 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 MDM1Q8TC05 714 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 IFI44Q8TCB0 444 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 TADA1Q96BN2 335 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 PCDH9Q9HC56 1237 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 DNPEPQ9ULA0 475 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 CLCA2Q9UQC9 943 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 PCDHA3Q9Y5H8 950 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 LRP4O75096 1905 aa19.22■□□□□ 0.67
CLN3-260ENST00000637578 A0A0U1RQS6 177 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 CCDC66A2RUB6 948 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 CAPN8A6NHC0 703 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 PDE2AO00408 941 aaPredicted RBP19.21■□□□□ 0.67
CLN3-260ENST00000637578 MT-CO3P00414 261 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 CTSEP14091 401 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 CD86P42081 329 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 ADCY2Q08462 1091 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 NR0B2Q15466 257 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 CDKN3Q16667 212 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 TFDP3Q5H9I0 405 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 DENND2CQ68D51 928 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 GUSBP11Q6P575 273 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 BZW1Q7L1Q6 419 aaKnown RBP19.21■□□□□ 0.67
CLN3-260ENST00000637578 ZNF765Q7L2R6 523 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 RD3Q7Z3Z2 195 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 ALG3Q92685 438 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 GLMNQ92990 594 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 IMP4Q96G21 291 aaKnown RBP19.21■□□□□ 0.67
CLN3-260ENST00000637578 NRSN2Q9GZP1 204 aa19.21■□□□□ 0.67
CLN3-260ENST00000637578 CST8O60676 142 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 ZRANB2O95218 330 aaKnown RBP eCLIP19.2■□□□□ 0.66
CLN3-260ENST00000637578 SOD1P00441 154 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 TGM2P21980 687 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 RPIAP49247 311 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 STC1P52823 247 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 EPHB1P54762 984 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 DYNLT1P63172 113 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 RTP5Q14D33 572 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 PRKD1Q15139 912 aaPredicted RBP19.2■□□□□ 0.66
CLN3-260ENST00000637578 RFLNAQ6ZTI6 216 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 HEATR4Q86WZ0 1026 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 GKN2Q86XP6 184 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 TRIM58Q8NG06 486 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 EXD1Q8NHP7 514 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 SCG3Q8WXD2 468 aaKnown RBP19.2■□□□□ 0.66
CLN3-260ENST00000637578 ABCG8Q9H221 673 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 MRPL40Q9NQ50 206 aaKnown RBP19.2■□□□□ 0.66
CLN3-260ENST00000637578 PHPT1Q9NRX4 125 aaPredicted RBP19.2■□□□□ 0.66
CLN3-260ENST00000637578 SAE1Q9UBE0 346 aaPredicted RBP19.2■□□□□ 0.66
CLN3-260ENST00000637578 ASXL3Q9C0F0 2248 aa19.2■□□□□ 0.66
CLN3-260ENST00000637578 hCG_1818297A0A087WSY0 165 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 MIF4GDA9UHW6 222 aaKnown RBP19.19■□□□□ 0.66
CLN3-260ENST00000637578 ANKRD66B4E2M5 251 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 FUCA1P04066 466 aa19.19■□□□□ 0.66
CLN3-260ENST00000637578 CEACAM5P06731 702 aa19.19■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 38.2 ms