RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 RPL26P61254 145 aaKnown RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 ZFP36L1Q07352 338 aaKnown RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 CLN3Q13286 438 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 LRP8Q14114 963 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 E4F1Q66K89 784 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 RAET1GQ6H3X3 334 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 ZNF765Q7L2R6 523 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 HEATR4Q86WZ0 1026 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 JAMLQ86YT9 394 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 CBARPQ8N350 705 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 ZNF843Q8N446 348 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 TEX26Q8N6G2 289 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 NAP1L5Q96NT1 182 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 FRMD8Q9BZ67 464 aaPredicted RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 PCDH18Q9HCL0 1135 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 RABGEF1Q9UJ41 708 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 RPL26L1Q9UNX3 145 aaKnown RBP11.91□□□□□ -0.5
UPF3B-204ENST00000619445 LOXL2Q9Y4K0 774 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 PCDHB11Q9Y5F2 797 aa11.91□□□□□ -0.5
UPF3B-204ENST00000619445 C1QL1O75973 258 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 CYP1A2P05177 515 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 CEACAM5P06731 702 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 LIPCP11150 499 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 SKILP12757 684 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 GM2AP17900 193 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 GPR1P46091 355 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 EPHB1P54762 984 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 CDK3Q00526 305 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 SLC25A11Q02978 314 aaKnown RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 TRA2AQ13595 282 aaKnown RBP eCLIP11.9□□□□□ -0.52e-6■■■■■ 34.6
UPF3B-204ENST00000619445 NR1D2Q14995 579 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 IQCB1Q15051 598 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 PDK2Q15119 407 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 TCEA2Q15560 299 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ZSCAN23Q3MJ62 389 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 MAP9Q49MG5 647 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 HGSNATQ68CP4 663 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ALG1LQ6GMV1 187 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 CAVIN1Q6NZI2 390 aaKnown RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ALKBH5Q6P6C2 394 aaKnown RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ADAMTSL4Q6UY14 1074 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ZNF438Q7Z4V0 828 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 B3GNT8Q7Z7M8 397 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 C17orf82Q86X59 251 aaPredicted RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 NRSN1Q8IZ57 195 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 Q8N9G6 341 aaPredicted RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ZSCAN1Q8NBB4 408 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 CCDC112Q8NEF3 446 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 FAM71BQ8TC56 605 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ZDHHC1Q8WTX9 485 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 MED8Q96G25 268 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ZNF670Q9BS34 389 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 NUP85Q9BW27 656 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 LGR4Q9BXB1 951 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 FOXP3Q9BZS1 431 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 MRPL40Q9NQ50 206 aaKnown RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 CAPN11Q9UMQ6 739 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 SLC17A4Q9Y2C5 497 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 LUC7L2Q9Y383 392 aaKnown RBP11.9□□□□□ -0.5
UPF3B-204ENST00000619445 RNF215Q9Y6U7 377 aa11.9□□□□□ -0.5
UPF3B-204ENST00000619445 ZFC3H1O60293 1989 aaKnown RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 TLN1Q9Y490 2541 aaKnown RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GOLGA6CA6NDK9 693 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GOLGA6BA6NDN3 693 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 A8MX80 341 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GOLGA6L19H0YKK7 550 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 PRB1P04280 392 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 ITGB2P05107 769 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 KRT7P08729 469 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GOLGA6DP0CG33 693 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 CCNCP24863 283 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 ETV3P41162 512 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GARSP41250 739 aaKnown RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 SSR1P43307 286 aaKnown RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 UBASH3AP57075 661 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 ITKQ08881 620 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GALNT2Q10471 571 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 TRAF2Q12933 501 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 SQSTM1Q13501 440 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 IFI16Q16666 785 aaKnown RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 Q6ZVL8 140 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 SLITRK4Q8IW52 837 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 PGBD5Q8N414 524 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 TTC9Q92623 222 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 AP2M1Q96CW1 435 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 SCARF2Q96GP6 870 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 ZNF830Q96NB3 372 aaPredicted RBP11.89□□□□□ -0.51
UPF3B-204ENST00000619445 TSGA13Q96PP4 275 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 SEMA3CQ99985 751 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 ANP32EQ9BTT0 268 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 THAP2Q9H0W7 228 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 NT5MQ9NPB1 228 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 ETNK2Q9NVF9 386 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 GOLGA6AQ9NYA3 693 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 TAAR2Q9P1P5 351 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 UVRAGQ9P2Y5 699 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 PISDQ9UG56 409 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 SUFUQ9UMX1 484 aa11.89□□□□□ -0.51
UPF3B-204ENST00000619445 A0A0J9YYE9 177 aa11.88□□□□□ -0.51
UPF3B-204ENST00000619445 NPIPB15A6NHN6 443 aaPredicted RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.5 ms