RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 MTM1Q13496 603 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 ZNF423Q2M1K9 1284 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 ESRP1Q6NXG1 681 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 SYT10Q6XYQ8 523 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 TMC3Q7Z5M5 1100 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 DCP2Q8IU60 420 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 PELI3Q8N2H9 469 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 PDCD7Q8N8D1 485 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 CCHCR1Q8TD31 782 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 TBL1YQ9BQ87 522 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 ETNK1Q9HBU6 452 aa16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 DNAAF2Q9NVR5 837 aaKnown RBP16.53■□□□□ 0.24
CCDC28A-202ENST00000611852 TOR1BO14657 336 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 AURKAO14965 403 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 PHF2O75151 1096 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 AP2A1O95782 977 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 CASQ1P31415 396 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 FDFT1P37268 417 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 YPEL5P62699 121 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 DPTQ07507 201 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 PDE1CQ14123 709 aaPredicted RBP16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 PRAMEF14Q5SWL7 426 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 TPRG1LQ5T0D9 272 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 STPG1Q5TH74 334 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 DENND5AQ6IQ26 1287 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 CCDC137Q6PK04 289 aaKnown RBP16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 NETO1Q8TDF5 533 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 GPR63Q9BZJ6 419 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 ABCG8Q9H221 673 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 TRABDQ9H4I3 376 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 LRRC40Q9H9A6 602 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 ERVMER34-1Q9H9K5 563 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 ARNT2Q9HBZ2 717 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 RAB6BQ9NRW1 208 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 CD84Q9UIB8 345 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 FNDC3AQ9Y2H6 1198 aaKnown RBP16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 CABIN1Q9Y6J0 2220 aa16.52■□□□□ 0.24
CCDC28A-202ENST00000611852 DNAH14Q0VDD8 3507 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 DMXL1Q9Y485 3027 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 SPTY2D1-AS1A0A0U1RR47 76 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 K7ESM1 405 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 PSMD3O43242 534 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 TRIM23P36406 574 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 SPINT3P49223 89 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 SEMA5AQ13591 1074 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 FZD2Q14332 565 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 KCTD19Q17RG1 926 aaPredicted RBP16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 PNCKQ6P2M8 343 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 C4orf22Q6V702 233 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 ZNF765Q7L2R6 523 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 NRSN1Q8IZ57 195 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 SCAMP4Q969E2 229 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 LRRC45Q96CN5 670 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 AP2M1Q96CW1 435 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 C16orf45Q96MC5 204 aaPredicted RBP16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 ELF4Q99607 663 aaPredicted RBP16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 APOOQ9BUR5 198 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 PKD2L2Q9NZM6 624 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 HACD3Q9P035 362 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 OR1A2Q9Y585 309 aa16.51■□□□□ 0.23
CCDC28A-202ENST00000611852 ASCC3Q8N3C0 2202 aaKnown RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 RGSL1A5PLK6 1076 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 ERI2A8K979 691 aaKnown RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 PDE2AO00408 941 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 ZNF500O60304 480 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 DFNA5O60443 496 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 SLC4A1P02730 911 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 TSHRP16473 764 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 HMGCLP35914 325 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 FNTAP49354 379 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 THOP1P52888 689 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 MSLNQ13421 630 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 GLT6D1Q7Z4J2 308 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 NLRP8Q86W28 1048 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 TTC30BQ8N4P2 665 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 BLOC1S5Q8TDH9 187 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 RNF14Q9UBS8 474 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 A0A1B0GTQ1 180 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 SOD1P00441 154 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 ZNF883P0CG24 379 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 RXRGP48443 463 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 ARRB1P49407 418 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 SHBQ15464 509 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 TRIP13Q15645 432 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 UAP1L1Q3KQV9 507 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 OXR1Q8N573 874 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 FUBP1Q96AE4 644 aaKnown RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 RIOK2Q9BVS4 552 aaKnown RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 TM7SF3Q9NS93 570 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 FEZ2Q9UHY8 353 aaPredicted RBP16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 NEU2Q9Y3R4 380 aa16.5■□□□□ 0.23
CCDC28A-202ENST00000611852 E7EVH7 732 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 SLC30A4O14863 429 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 SUN1O94901 812 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 KRT14P02533 472 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 TEAD1P28347 426 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 PAFAH1B1P43034 410 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 CCT8P50990 548 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 PTK2BQ14289 1009 aa16.49■□□□□ 0.23
CCDC28A-202ENST00000611852 NFATC4Q14934 902 aa16.49■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms