RNA–Protein interactions for RNA: ENST00000611481.1

LINC00540-201, long intergenic non-protein coding RNA 540, humanhuman

TSL 4

Gene LINC00540, Length 588 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00540-201ENST00000611481 PADI4Q9UM07 663 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 GPR52Q9Y2T5 361 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 NEU2Q9Y3R4 380 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 NFASCO94856 1347 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 UBE4BO95155 1302 aa4.6□□□□□ -1.67
LINC00540-201ENST00000611481 ZFC3H1O60293 1989 aaKnown RBP4.6□□□□□ -1.67
LINC00540-201ENST00000611481 BCAT2O15382 392 aaPredicted RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 LDOC1O95751 146 aaPredicted RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 GNLYP22749 145 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 RRM1P23921 792 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 TKTP29401 623 aaKnown RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 CCT8P50990 548 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 NUCB1Q02818 461 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 GRIK3Q13003 919 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ITGB3BPQ13352 177 aaPredicted RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 MTM1Q13496 603 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 KLF9Q13886 244 aaPredicted RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 CLCA4Q14CN2 919 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ETFDHQ16134 617 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 KIF19Q2TAC6 998 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 CCDC184Q52MB2 194 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ARHGAP15Q53QZ3 475 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 EOGTQ5NDL2 527 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 NIPBLQ6KC79 2804 aaeCLIP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 MIS18BP1Q6P0N0 1132 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 C1orf122Q6ZSJ8 110 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 OVCH2Q7RTZ1 564 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 RHPN2Q8IUC4 686 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 KRT78Q8N1N4 520 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 OR2C3Q8N628 320 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 DCBLD1Q8N8Z6 715 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 IL17RCQ8NAC3 791 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 CNNM3Q8NE01 707 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 MYCBPAPQ8TBZ2 947 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 NUP210Q8TEM1 1887 aaPredicted RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 PIGOQ8TEQ8 1089 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 JADE3Q92613 823 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 NLRP4Q96MN2 994 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 PIGSQ96S52 555 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 CCNL2Q96S94 520 aaPredicted RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 SEC62Q99442 399 aaKnown RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 EIF2AQ9BY44 585 aaKnown RBP4.59□□□□□ -1.67
LINC00540-201ENST00000611481 BHMT2Q9H2M3 363 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 KAT14Q9H8E8 782 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ECT2Q9H8V3 914 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 LY9Q9HBG7 655 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ASCL3Q9NQ33 180 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 NRIP3Q9NQ35 241 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 PDP2Q9P2J9 529 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ANAPC2Q9UJX6 822 aa4.59□□□□□ -1.67
LINC00540-201ENST00000611481 ATRQ13535 2644 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 ARHGAP10A1A4S6 786 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 KLRF2D3W0D1 207 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 H3BML4 177 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 I3L4J1 428 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 K7ENM7 598 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 IPO5O00410 1097 aaKnown RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 RTN2O75298 545 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 USP12O75317 370 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 HAUS5O94927 633 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 NADKO95544 446 aaPredicted RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 MT-CO3P00414 261 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 KRT7P08729 469 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CBSLP0DN79 551 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 GABRG2P18507 467 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 HOXA11P31270 313 aaPredicted RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CBSP35520 551 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 SLC6A9P48067 706 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CSNK1EP49674 416 aaKnown RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 TERF1P54274 439 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CDC42EP1Q00587 391 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 MGAT2Q10469 447 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 TRAF1Q13077 416 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 DYRK1AQ13627 763 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 FHL1Q13642 323 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 DCAF6Q58WW2 860 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 EMC10Q5UCC4 262 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 RNF220Q5VTB9 566 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 MORN5Q5VZ52 161 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 SLC9A4Q6AI14 798 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 SLC8B1Q6J4K2 584 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CRELD2Q6UXH1 353 aaPredicted RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF782Q6ZMW2 699 aaPredicted RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 KCNK18Q7Z418 384 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 ZNF410Q86VK4 478 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 GATAD2AQ86YP4 633 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CMIPQ8IY22 773 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 GRAMD1CQ8IYS0 662 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 MYCT1Q8N699 235 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CCHCR1Q8TD31 782 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 PIBF1Q8WXW3 757 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 ERLEC1Q96DZ1 483 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 GTPBP4Q9BZE4 634 aaKnown RBP4.58□□□□□ -1.68
LINC00540-201ENST00000611481 UNC45AQ9H3U1 944 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 MANSC1Q9H8J5 431 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CD93Q9NPY3 652 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 L1RE1Q9UN81 338 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 POLHQ9Y253 713 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 CCL26Q9Y258 94 aa4.58□□□□□ -1.68
LINC00540-201ENST00000611481 TBC1D30Q9Y2I9 924 aa4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms