RNA–Protein interactions for RNA: ENST00000600259.5

VRK3-220, Transcript of vaccinia related kinase 3, humanhuman

TSL 2

Gene VRK3, Length 572 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-220ENST00000600259 LHCGRP22888 699 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 F8A1P23610 371 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 MPSTP25325 297 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 SERPINA4P29622 427 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 OAS2P29728 719 aaKnown RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 HTR7P34969 479 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 CCR10P46092 362 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 CD97P48960 835 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 AIF1P55008 147 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 POLR2FP61218 127 aaKnown RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 POLR2LP62875 67 aaKnown RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 CDK3Q00526 305 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 MC2RQ01718 297 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 BCL2L1Q07817 233 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 IHHQ14623 411 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 TSR1Q2NL82 804 aaKnown RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 DPCR1Q3MIW9 517 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 MAP9Q49MG5 647 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 CRTC2Q53ET0 693 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 TCP11X2Q5H9J9 407 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 CHCHD2P9Q5T1J5 151 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 ANKS6Q68DC2 871 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 Q6ZVL8 140 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 HSD11B1LQ7Z5J1 315 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 HEATR4Q86WZ0 1026 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 FAM114A1Q8IWE2 563 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 PGBD5Q8N414 524 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 IL22RA1Q8N6P7 574 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 NPWQ8N729 165 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 AGBL5Q8NDL9 886 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 MIB2Q96AX9 1013 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 RTP4Q96DX8 246 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 ABHD17AQ96GS6 310 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 CATSPER2Q96P56 530 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 PSKH2Q96QS6 385 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 NCAPGQ9BPX3 1015 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 CNPY3Q9BT09 278 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 SYT11Q9BT88 431 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 SELENOOQ9BVL4 669 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 GSDMCQ9BYG8 508 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 VPS16Q9H269 839 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 NLRC4Q9NPP4 1024 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 ZNF71Q9NQZ8 489 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 FBXO8Q9NRD0 319 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 SLC39A1Q9NY26 324 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 AKAP7Q9P0M2 348 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 SEPT3Q9UH03 358 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 PLAAQ9Y263 795 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 PPIL1Q9Y3C6 166 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 TMEM184BQ9Y519 407 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 PCDHGC4Q9Y5F7 938 aa6.1□□□□□ -1.43
VRK3-220ENST00000600259 PCYT1BQ9Y5K3 369 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 RP1L1Q8IWN7 2480 aaPredicted RBP6.1□□□□□ -1.43
VRK3-220ENST00000600259 ZFC3H1O60293 1989 aaKnown RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 ICE1Q9Y2F5 2266 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 A0A0U1RQS6 177 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ARHGAP42A6NI28 874 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ZNF891A8MT65 544 aaPredicted RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 DLGAP3O95886 979 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 CALB1P05937 261 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ERCC2P18074 760 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 TNFAIP3P21580 790 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 MAP4P27816 1152 aaKnown RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 VIPR1P32241 457 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 CSTF2P33240 577 aaKnown RBP eCLIP6.09□□□□□ -1.43
VRK3-220ENST00000600259 ETV3P41162 512 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 GNPDA1P46926 289 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 FASLGP48023 281 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 HCAR3P49019 387 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ATP1A2P50993 1020 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SCNN1BP51168 640 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 DPTQ07507 201 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 IL10RBQ08334 325 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SLC10A7Q0GE19 358 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ABHD18Q0P651 414 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ILF3Q12906 894 aaKnown RBP eCLIP6.09□□□□□ -1.43
VRK3-220ENST00000600259 RFTN1Q14699 578 aaPredicted RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 NCAPHQ15003 741 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ACOX1Q15067 660 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 TPD52L1Q16890 204 aaPredicted RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 PYCR3Q53H96 274 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 DCAF12Q5T6F0 453 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 CDKAL1Q5VV42 579 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 HIST2H2BCQ6DN03 193 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SLC30A9Q6PML9 568 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 TSPAN33Q86UF1 283 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 NLRP8Q86W28 1048 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 UNC5BQ8IZJ1 945 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 MCOLN2Q8IZK6 566 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SFRP1Q8N474 314 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 PIH1D2Q8WWB5 315 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 DTD2Q96FN9 168 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SCRN2Q96FV2 425 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 COX14Q96I36 57 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 SMIM14Q96QK8 99 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 MCCC1Q96RQ3 725 aaPredicted RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 PEBP4Q96S96 227 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 KCTD15Q96SI1 283 aaPredicted RBP6.09□□□□□ -1.43
VRK3-220ENST00000600259 DPYSL5Q9BPU6 564 aa6.09□□□□□ -1.43
VRK3-220ENST00000600259 ASPSCR1Q9BZE9 553 aa6.09□□□□□ -1.43
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms