RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SZT2Q5T011 3432 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 CCDC162PA2VCL2 907 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 A8MX80 341 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 CXorf49A8MYA2 514 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 HMGB1P1B2RPK0 211 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 CD3EAPO15446 510 aaKnown RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 TSPAN6O43657 245 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 BUD23O43709 281 aaKnown RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 AP1G1O43747 822 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 SPAM1P38567 509 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 DGKEP52429 567 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 STC1P52823 247 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 CSE1LP55060 971 aaKnown RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 PTSQ03393 145 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 DNAJC3Q13217 504 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 TMEM52BQ4KMG9 183 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 CERS6Q6ZMG9 384 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 PTAR1Q7Z6K3 402 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 STRA8Q7Z7C7 330 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 KBTBD6Q86V97 674 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 CNTN4Q8IWV2 1026 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 NRSN1Q8IZ57 195 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 SIX5Q8N196 739 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 HDDC3Q8N4P3 179 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 OR13C4Q8NGS5 318 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 SIPA1Q96FS4 1042 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 SMIM14Q96QK8 99 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 OSBPL6Q9BZF3 934 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 BPIFA1Q9NP55 256 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 LTB4R2Q9NPC1 389 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 POLR3BQ9NW08 1133 aaPredicted RBP15.23■□□□□ 0.03
TRIM28-209ENST00000597423 FBXO5Q9UKT4 447 aa15.23■□□□□ 0.03
TRIM28-209ENST00000597423 A0A1W2PQF6 199 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 SHISA7A6NL88 538 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 MID1O15344 667 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 GOT2P00505 430 aaKnown RBP15.22■□□□□ 0.03
TRIM28-209ENST00000597423 SNRPAP09012 282 aaKnown RBP15.22■□□□□ 0.03
TRIM28-209ENST00000597423 ELFN1P0C7U0 828 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 CHRM1P11229 460 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-209ENST00000597423 KRT15P19012 456 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 ITGALP20701 1170 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 MC4RP32245 332 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 MMP12P39900 470 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 P2RY2P41231 377 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 POLD2P49005 469 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 CACNG1Q06432 222 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 CNTN1Q12860 1018 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 GPR33Q49SQ1 333 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 RNF187Q5TA31 235 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-209ENST00000597423 ZNF470Q6ECI4 717 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 KIAA1211LQ6NV74 962 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP15.22■□□□□ 0.03
TRIM28-209ENST00000597423 USP30Q70CQ3 517 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 GALNT7Q86SF2 657 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 TSPAN33Q86UF1 283 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 UNC5BQ8IZJ1 945 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 DTX3LQ8TDB6 740 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 CXorf40AQ8TE69 158 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 DCAKDQ8WVC6 231 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 ATP6V1G3Q96LB4 118 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 PLEKHG4BQ96PX9 1271 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 FAM83DQ9H4H8 585 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 FBXL12Q9NXK8 326 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 SENP1Q9P0U3 644 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 COL4A3Q01955 1670 aa15.22■□□□□ 0.03
TRIM28-209ENST00000597423 GLYATL1P3A0A0U1RQE8 302 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 KRBA1A5PL33 1030 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 ANTXRLA6NF34 631 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 GOLGA8TH3BQL2 631 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 WNT9AO14904 365 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 AREL1O15033 823 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 LZTS3O60299 673 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-209ENST00000597423 NDUFS3O75489 264 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 RNASEH2AO75792 299 aaKnown RBP15.21■□□□□ 0.03
TRIM28-209ENST00000597423 C1QAP02745 245 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 MT-ND3P03897 115 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 C7P10643 843 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 OGNP20774 298 aaKnown RBP15.21■□□□□ 0.03
TRIM28-209ENST00000597423 ARNTP27540 789 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 SPINT3P49223 89 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 TTPAP49638 278 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 LIG3P49916 1009 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 ARSDP51689 593 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 COPAP53621 1224 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 PTPRCAPQ14761 206 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 EFTUD2Q15029 972 aaKnown RBP eCLIP15.21■□□□□ 0.032e-16■■■■■ 50.3
TRIM28-209ENST00000597423 ACOX1Q15067 660 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 PTPRRQ15256 657 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 TMED2Q15363 201 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 CRY1Q16526 586 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 ZRANB3Q5FWF4 1079 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 PACS1Q6VY07 963 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 SYT13Q7L8C5 426 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 TAS2R42Q7RTR8 314 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 C2CD4AQ8NCU7 369 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-209ENST00000597423 ZNF398Q8TD17 642 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 ULK4Q96C45 1275 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 AGAP2Q99490 1192 aa15.21■□□□□ 0.03
TRIM28-209ENST00000597423 SUDS3Q9H7L9 328 aaPredicted RBP15.21■□□□□ 0.03
TRIM28-209ENST00000597423 SMYD2Q9NRG4 433 aa15.21■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms