RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 ELFN1P0C7U0 828 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 ZNF806P0C7X5 589 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 HNRNPA2B1P22626 353 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 CA4P22748 312 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 XPAP23025 273 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 MPLP40238 635 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 ZNF140P52738 457 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 TERF1P54274 439 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 EPHB1P54762 984 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 RACK1P63244 317 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 CDK16Q00536 496 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 TUBB2AQ13885 445 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 INPP5AQ14642 412 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 IRF4Q15306 451 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 SHBQ15464 509 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 TAF1AQ15573 450 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 MSS51Q4VC12 460 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 SETMARQ53H47 684 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 WDR45BQ5MNZ6 344 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 CFAP58Q5T655 872 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 HENMT1Q5T8I9 393 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 HIBCHQ6NVY1 386 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 ESRP1Q6NXG1 681 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 PNCKQ6P2M8 343 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 SYDE1Q6ZW31 735 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 MPP5Q8N3R9 675 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 ZCCHC9Q8N567 271 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 MCUQ8NE86 351 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 OR13H1Q8NG92 308 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 OR13C4Q8NGS5 318 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 GRK7Q8WTQ7 553 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 PTCD2Q8WV60 388 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 SERAC1Q96JX3 654 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 SIGLEC10Q96LC7 697 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 PPP1R2P1Q96PQ5 205 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 MYOCQ99972 504 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 HINFPQ9BQA5 517 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 ERP44Q9BS26 406 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 TUBB2BQ9BVA1 445 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 FSD1LQ9BXM9 530 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 TRABDQ9H4I3 376 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 BPIFA1Q9NP55 256 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 IL26Q9NPH9 171 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 NFKBIL1Q9UBC1 381 aaPredicted RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 DMGDHQ9UI17 866 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 KLF15Q9UIH9 416 aa10.55□□□□□ -0.72
LIG1-210ENST00000596332 TPX2Q9ULW0 747 aaKnown RBP10.55□□□□□ -0.72
LIG1-210ENST00000596332 MYLKQ15746 1914 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 SCN8AQ9UQD0 1980 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 A0A1B0GTW7 788 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 A0A1B0GVT2 93 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 FAM187AA6NFU0 413 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 AGAP14A8MT82 685 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 MEI4A8MW99 385 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 VILLO15195 856 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 BCAT2O15382 392 aaPredicted RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 SEC31AO94979 1220 aaKnown RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 GAS8O95995 478 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 CD38P28907 300 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 HOXD12P35452 270 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 NUDT1P36639 197 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 CTSKP43235 329 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 ARSDP51689 593 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 CRADDP78560 199 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 BASP1P80723 227 aaKnown RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 ACVR1Q04771 509 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 CDH17Q12864 832 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 SGCGQ13326 291 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 MTM1Q13496 603 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 PEX6Q13608 980 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 LRRC14Q15048 493 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 ACOX1Q15067 660 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 SF3A2Q15428 464 aaKnown RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 CCDC38Q502W7 563 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 FNBP1LQ5T0N5 605 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 DENND2CQ68D51 928 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 LRRC8BQ6P9F7 803 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 ZDHHC24Q6UX98 284 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 ZNF765Q7L2R6 523 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 LINC00523Q86TU6 105 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 IGDCC3Q8IVU1 814 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 PNPLA1Q8N8W4 532 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 MFSD2AQ8NA29 543 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 DENND6BQ8NEG7 585 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 OR13J1Q8NGT2 312 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 DTX3LQ8TDB6 740 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 BLOC1S5Q8TDH9 187 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 COX14Q96I36 57 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 RANBP9Q96S59 729 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 C19orf43Q9BQ61 176 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 TRIM56Q9BRZ2 755 aaKnown RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 RIOK2Q9BVS4 552 aaKnown RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 CARD6Q9BX69 1037 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 TEX101Q9BY14 249 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 MIR1-1HGQ9H1L0 117 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 HACD3Q9P035 362 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 SLC2A6Q9UGQ3 507 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 SNX24Q9Y343 169 aa10.54□□□□□ -0.72
LIG1-210ENST00000596332 PCYT1BQ9Y5K3 369 aaPredicted RBP10.54□□□□□ -0.72
LIG1-210ENST00000596332 EP300Q09472 2414 aaPredicted RBP10.54□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms