RNA–Protein interactions for RNA: ENST00000580958.5

SS18-217, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 775 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-217ENST00000580958 ZNF366Q8N895 744 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 ARMC2Q8NEN0 867 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 OR2A12Q8NGT7 310 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 GRIN3AQ8TCU5 1115 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 LRRC8CQ8TDW0 803 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 FRS2Q8WU20 508 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 ELSPBP1Q96BH3 223 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 NSRP1Q9H0G5 558 aaKnown RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 TTYH1Q9H313 450 aaPredicted RBP10.52□□□□□ -0.73
SS18-217ENST00000580958 POMKQ9H5K3 350 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 FAM96AQ9H5X1 160 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 MAGEE1Q9HCI5 957 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 ZNF358Q9NW07 568 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 ELOVL2Q9NXB9 296 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 DCDC2Q9UHG0 476 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 EMCNQ9ULC0 261 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PHTF1Q9UMS5 762 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 MTCH2Q9Y6C9 303 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 MYO10Q9HD67 2058 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 REV3LO60673 3130 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 CDH23Q9H251 3354 aa10.52□□□□□ -0.73
SS18-217ENST00000580958 PRRT4C9JH25 899 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 LAMP2P13473 410 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 PSMC3P17980 439 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 BGNP21810 368 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 GDI1P31150 447 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 GJA4P35212 333 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 OPRD1P41143 372 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 CSRP3P50461 194 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 TAS2R39P59534 338 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ST8SIA6P61647 398 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 POU4F1Q01851 419 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 SEMG2Q02383 582 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 PEX6Q13608 980 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ADGRE1Q14246 886 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ZNF460Q14592 562 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 GRIN2CQ14957 1233 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 INSCQ1MX18 579 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 TAF1BQ53T94 588 aaPredicted RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 HECTD2Q5U5R9 776 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 NAIF1Q69YI7 327 aaPredicted RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 GDPD4Q6W3E5 623 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 KYAT3Q6YP21 454 aaKnown RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 RGS9BPQ6ZS82 235 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 RAPH1Q70E73 1250 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 SDCCAG8Q86SQ7 713 aaPredicted RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 CLEC14AQ86T13 490 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 CEP97Q8IW35 865 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 MICALL1Q8N3F8 863 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 PHTF2Q8N3S3 785 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ZNF75CPQ92670 426 aaPredicted RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 FGF14Q92915 247 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 KCTD12Q96CX2 325 aaKnown RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 EID2BQ96D98 161 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ECHDC3Q96DC8 303 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 MSLNLQ96KJ4 702 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ZNF641Q96N77 438 aaPredicted RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 KLHL32Q96NJ5 620 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 NDNQ99608 321 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 HEPHQ9BQS7 1158 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ZFYVE1Q9HBF4 777 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 FGFR1OP2Q9NVK5 253 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 GTSE1Q9NYZ3 720 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 IL17CQ9P0M4 197 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 TLK1Q9UKI8 766 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 SLC8A2Q9UPR5 921 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 ANKRD6Q9Y2G4 727 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 FNDC3AQ9Y2H6 1198 aaKnown RBP10.51□□□□□ -0.73
SS18-217ENST00000580958 PKP3Q9Y446 797 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 WASF2Q9Y6W5 498 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 LAMA3Q16787 3333 aa10.51□□□□□ -0.73
SS18-217ENST00000580958 COL4A2P08572 1712 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 C1orf232A0A0U1RR37 186 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 NPIPB15A6NHN6 443 aaPredicted RBP10.5□□□□□ -0.73
SS18-217ENST00000580958 A8MX80 341 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 PLIN3O60664 434 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 ECI2O75521 394 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 CLDN7O95471 211 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 PROCP04070 461 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 BPGMP07738 259 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 GSTA1P08263 222 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 SLC35E2BP0CK96 405 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 NEFHP12036 1026 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 STMN1P16949 149 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 CRABP2P29373 138 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 PMLP29590 882 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 CDKN1CP49918 316 aaPredicted RBP10.5□□□□□ -0.73
SS18-217ENST00000580958 STC1P52823 247 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 SLC12A2P55011 1212 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 RAB10P61026 200 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 SF3A3Q12874 501 aaKnown RBP eCLIP10.5□□□□□ -0.734e-6■■■■□ 22.2
SS18-217ENST00000580958 CDKN3Q16667 212 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 TYSND1Q2T9J0 566 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 FNDC3BQ53EP0 1204 aaKnown RBP10.5□□□□□ -0.73
SS18-217ENST00000580958 ZRANB3Q5FWF4 1079 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 FOXR1Q6PIV2 292 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 TPRG1Q6ZUI0 275 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 FAM47EQ6ZV65 393 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 TSPAN33Q86UF1 283 aa10.5□□□□□ -0.73
SS18-217ENST00000580958 SFTPA1Q8IWL2 248 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms