RNA–Protein interactions for RNA: ENST00000572607.1

VPS53-214, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 3

Gene VPS53, Length 732 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-214ENST00000572607 BAG1Q99933 345 aaPredicted RBP8.12□□□□□ -1.11
VPS53-214ENST00000572607 APOOQ9BUR5 198 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 UCKL1Q9NWZ5 548 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 DTLQ9NZJ0 730 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 SEPT10Q9P0V9 454 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 IMPACTQ9P2X3 320 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 KLQ9UEF7 1012 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 HYOU1Q9Y4L1 999 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 ALG6Q9Y672 507 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 CSNK1G3Q9Y6M4 447 aa8.12□□□□□ -1.11
VPS53-214ENST00000572607 GOLGA6CA6NDK9 693 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 GOLGA6BA6NDN3 693 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 KCNK1O00180 336 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TRIM38O00635 465 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 DKK1O94907 266 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 HEXIM1O94992 359 aaKnown RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 ZRANB2O95218 330 aaKnown RBP eCLIP8.11□□□□□ -1.11
VPS53-214ENST00000572607 RASGRP1O95267 797 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TNFP01375 233 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 JCHAINP01591 159 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 HLA-DQB2P05538 268 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 ANXA6P08133 673 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 ALPIP09923 528 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 GOLGA6DP0CG33 693 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 JUPP14923 745 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TSHRP16473 764 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 CTPS1P17812 591 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TGM2P21980 687 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 ACP1P24666 158 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 CETN2P41208 172 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TNNT3P45378 269 aaPredicted RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 NR2C2P49116 596 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 KIAA1024LP59773 190 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 IFI35P80217 286 aaPredicted RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 E2F1Q01094 437 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 DSC2Q02487 901 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 EIF2B5Q13144 721 aaKnown RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 ELOCQ15369 112 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 CNGA3Q16281 694 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TUSC1Q2TAM9 212 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 CCDC181Q5TID7 509 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 KAZNQ674X7 775 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 ALG1LQ6GMV1 187 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 ZCCHC8Q6NZY4 707 aaKnown RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 MFSD7Q6UXD7 560 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 CCNI2Q6ZMN8 369 aaPredicted RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 KANSL1Q7Z3B3 1105 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 RD3Q7Z3Z2 195 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TMPRSS12Q86WS5 348 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 HID1Q8IV36 788 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 KATNAL2Q8IYT4 538 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 PLD5Q8N7P1 536 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 ARMC2Q8NEN0 867 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 SCRN2Q96FV2 425 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 MCCC1Q96RQ3 725 aaPredicted RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 LGMNQ99538 433 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 FERMT1Q9BQL6 677 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 TDRD1Q9BXT4 1180 aaKnown RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 WDR26Q9H7D7 661 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 PHPT1Q9NRX4 125 aaPredicted RBP8.11□□□□□ -1.11
VPS53-214ENST00000572607 GOLGA6AQ9NYA3 693 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 OR1A2Q9Y585 309 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 KALRNO60229 2985 aa8.11□□□□□ -1.11
VPS53-214ENST00000572607 SHROOM3Q8TF72 1996 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 FLNBO75369 2602 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 A0A0J9YYE9 177 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CAPN8A6NHC0 703 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 C3orf70A6NLC5 250 aaPredicted RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 K7ESM1 405 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 TPP1O14773 563 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 MTSS1O43312 755 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 MAN1A2O60476 641 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CST8O60676 142 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 TRBC1P01850 177 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 PTMAP06454 111 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 PYGLP06737 847 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CKMT1AP12532 417 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 ZNF30P17039 623 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CDC25BP30305 580 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CD86P42081 329 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CDKN2BP42772 138 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 VAV2P52735 878 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 HK3P52790 923 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 RPL26P61254 145 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 KIF5AQ12840 1032 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 SLC10A2Q12908 348 aaPredicted RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 SMAD1Q15797 465 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 DEFB133Q30KQ1 61 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 PRRT3Q5FWE3 981 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 TFDP3Q5H9I0 405 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 TPRG1LQ5T0D9 272 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 RAET1GQ6H3X3 334 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 CCDC70Q6NSX1 233 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 ESRP1Q6NXG1 681 aaKnown RBP8.1□□□□□ -1.11
VPS53-214ENST00000572607 PNCKQ6P2M8 343 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 NPNTQ6UXI9 565 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 KDM7AQ6ZMT4 941 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 SPOCD1Q6ZMY3 1216 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 GAS2L3Q86XJ1 694 aa8.1□□□□□ -1.11
VPS53-214ENST00000572607 GKN2Q86XP6 184 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms