RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 MAXP61244 160 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 AP1S1P61966 158 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 SLC25A11Q02978 314 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 TYRO3Q06418 890 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 BCL2L1Q07817 233 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 EIF3IQ13347 325 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 LBRQ14739 615 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 SMTNL2Q2TAL5 461 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ZSCAN23Q3MJ62 389 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 PPP6R3Q5H9R7 873 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 TMCO4Q5TGY1 634 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 HGSNATQ68CP4 663 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 CCDC81Q6ZN84 652 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 TECPR1Q7Z6L1 1165 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 TAF8Q7Z7C8 310 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ZFAND4Q86XD8 727 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 CPNE8Q86YQ8 564 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 NAGSQ8N159 534 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 FAM46DQ8NEK8 389 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 OR6C4Q8NGE1 309 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 PIH1D2Q8WWB5 315 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 HTR3CQ8WXA8 447 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 SCG3Q8WXD2 468 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 CCDC97Q96F63 343 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 DTD2Q96FN9 168 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 MED8Q96G25 268 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 SCARF2Q96GP6 870 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 BTBD6Q96KE9 485 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 TMEM74Q96NL1 305 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ZNF599Q96NL3 588 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 CSPG4P5Q96PW8 444 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 PHF12Q96QT6 1004 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 MCCC1Q96RQ3 725 aaPredicted RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 NUDCD1Q96RS6 583 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 MGME1Q9BQP7 344 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 ISCUQ9H1K1 167 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 TSPY26PQ9H489 355 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 SP110Q9HB58 689 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 GEMIN8Q9NWZ8 242 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 TMEM63CQ9P1W3 806 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 LRIT1Q9P2V4 623 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 CNOT8Q9UFF9 292 aaKnown RBP6.72□□□□□ -1.33
VPS53-213ENST00000572334 PISDQ9UG56 409 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 SEPT3Q9UH03 358 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 PLEKHM1Q9Y4G2 1056 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 LOXL2Q9Y4K0 774 aa6.72□□□□□ -1.33
VPS53-213ENST00000572334 SPTBP11277 2137 aa6.71□□□□□ -1.33
VPS53-213ENST00000572334 MED13Q9UHV7 2174 aa6.71□□□□□ -1.33
VPS53-213ENST00000572334 A0A1B0GTH6 734 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 A0A1W2PQC6 194 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 IQCJ-SCHIP1C9J366 451 aaPredicted RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 TMX2-CTNND1H3BSU7 103 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 KIF2AO00139 706 aaPredicted RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 CACNB4O00305 520 aaPredicted RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 PPM1DO15297 605 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PRPSAP2O60256 369 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 SOCS5O75159 536 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PGLSO95336 258 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ECEL1O95672 775 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 EML2O95834 649 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PDHA1P08559 390 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CD48P09326 243 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 LIPCP11150 499 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CCL4P13236 92 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 TEAD1P28347 426 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CD1CP29017 333 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 VIPR1P32241 457 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CSF2RBP32927 897 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PCK1P35558 622 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 PBX1P40424 430 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ETV3P41162 512 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 POLD2P49005 469 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ARSEP51690 589 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ZNF135P52742 658 aaPredicted RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 POLR2LP62875 67 aaKnown RBP6.71□□□□□ -1.34
VPS53-213ENST00000572334 CBX1P83916 185 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CDK3Q00526 305 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 DPTQ07507 201 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 IQCB1Q15051 598 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ACOX1Q15067 660 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ASIC2Q16515 512 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ANO6Q4KMQ2 910 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 CFAP58Q5T655 872 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 Q6ZVL8 140 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 VASH2Q86V25 355 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 HEATR4Q86WZ0 1026 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 KRT222Q8N1A0 295 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 LZTR1Q8N653 840 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 TEX26Q8N6G2 289 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ATL2Q8NHH9 583 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 FAM71BQ8TC56 605 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 EXTL1Q92935 676 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 USP7Q93009 1102 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 ZNF653Q96CK0 615 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 NUS1Q96E22 293 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 SCRN2Q96FV2 425 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 WDR24Q96S15 920 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 AGAP2Q99490 1192 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 BPIFA3Q9BQP9 254 aa6.71□□□□□ -1.34
VPS53-213ENST00000572334 NUDT22Q9BRQ3 303 aa6.71□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms