RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 CYP2U1Q7Z449 544 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 LINC00523Q86TU6 105 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 HOOK3Q86VS8 718 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TBC1D3Q8IZP1 549 aaPredicted RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 CEP112Q8N8E3 955 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 MNS1Q8NEH6 495 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 OR13C4Q8NGS5 318 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 OR13J1Q8NGT2 312 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 BRSK1Q8TDC3 778 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 ART4Q93070 314 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SCAMP4Q969E2 229 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 CCDC97Q96F63 343 aaPredicted RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 SNF8Q96H20 258 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SPACA7Q96KW9 195 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 LENG8Q96PV6 779 aaPredicted RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 RANBP9Q96S59 729 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SLC17A9Q9BYT1 436 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 ABCG8Q9H221 673 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 KCNH6Q9H252 994 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 FZD3Q9NPG1 666 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 GDF3Q9NR23 364 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 TREX1Q9NSU2 369 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SYBUQ9NX95 663 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 WHRNQ9P202 907 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 SLC2A6Q9UGQ3 507 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 EIF2B4Q9UI10 523 aaKnown RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 PILRBQ9UKJ0 227 aa9.28□□□□□ -0.92
VPS35-211ENST00000569950 CNOT6Q9ULM6 557 aaKnown RBP9.28□□□□□ -0.92
VPS35-211ENST00000569950 ARHGEF17Q96PE2 2063 aaPredicted RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 ASCC3Q8N3C0 2202 aaKnown RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 GOLGA8CPA6NN73 597 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 AGAP14A8MT82 685 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 FADS2P1A8MWK0 482 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 H0Y8X5 98 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 CCL22O00626 93 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 GPR39O43194 453 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 FSBPO95073 299 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 PAK4O96013 591 aaPredicted RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 C1QAP02745 245 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ELFN1P0C7U0 828 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 CYP2A6P11509 494 aaPredicted RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 TGM1P22735 817 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 MGAT1P26572 445 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 CD27P26842 260 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ACTN2P35609 894 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 EPHB1P54762 984 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 DCDC1P59894 354 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 DPTQ07507 201 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 SFSWAPQ12872 951 aaKnown RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 PEX6Q13608 980 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 SIM2Q14190 667 aaPredicted RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 POU6F1Q14863 301 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 FASTKD3Q14CZ7 662 aaKnown RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 IRF4Q15306 451 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 TAF1AQ15573 450 aaPredicted RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 CFAP58Q5T655 872 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ERAP2Q6P179 960 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 LAYNQ6UX15 382 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ZNF765Q7L2R6 523 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ARMCX6Q7L4S7 300 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 MAATS1Q7Z4T9 603 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ABI3BPQ7Z7G0 1075 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 NLRP8Q86W28 1048 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 RAVER1Q8IY67 606 aaKnown RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 SLC22A18ASQ8N1D0 253 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 PNPLA1Q8N8W4 532 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 FBXO25Q8TCJ0 367 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 CCHCR1Q8TD31 782 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 BLOC1S5Q8TDH9 187 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 PTCD2Q8WV60 388 aaKnown RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 LRRC45Q96CN5 670 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 SLC6A18Q96N87 628 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 FCRL3Q96P31 734 aaPredicted RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 PRRX2Q99811 253 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 C19orf43Q9BQ61 176 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 KIFC1Q9BW19 673 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 TRABDQ9H4I3 376 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ANKZF1Q9H8Y5 726 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ZFYVE1Q9HBF4 777 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 IL26Q9NPH9 171 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.27□□□□□ -0.93
VPS35-211ENST00000569950 HACD3Q9P035 362 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 CD84Q9UIB8 345 aa9.27□□□□□ -0.93
VPS35-211ENST00000569950 ATXN2Q99700 1313 aaKnown RBP9.27□□□□□ -0.93
VPS35-211ENST00000569950 ZCWPW2A0A1B0GU75 182 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 E7EVH7 732 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 PROB1E7EW31 1015 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 H7C0S8 307 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 SLC31A1O15431 190 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 TM7SF2O76062 418 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 EPN2O95208 641 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 FUCA1P04066 466 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 PRSS56P0CW18 603 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 MYBL2P10244 700 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 XPAP23025 273 aaPredicted RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 NMBRP28336 390 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 TRIM23P36406 574 aa9.26□□□□□ -0.93
VPS35-211ENST00000569950 ARCN1P48444 511 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 CARSP49589 748 aaKnown RBP9.26□□□□□ -0.93
VPS35-211ENST00000569950 PTPN5P54829 565 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms