RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 UGP2Q16851 508 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 BRMS1LQ5PSV4 323 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 KRT39Q6A163 491 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 FRMD7Q6ZUT3 714 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 SLC13A5Q86YT5 568 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 OFCC1Q8IZS5 231 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 PARP8Q8N3A8 854 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CCDC185Q8N715 623 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 TRAF3IP1Q8TDR0 691 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 TRIM45Q9H8W5 580 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 JPH1Q9HDC5 661 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 RAB20Q9NX57 234 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CNOT11Q9UKZ1 510 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 AP4E1Q9UPM8 1137 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 HTRA2O43464 458 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 C4BPAP04003 597 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 CHRM5P08912 532 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 APEHP13798 732 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 XRCC1P18887 633 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 AOC1P19801 751 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 ALDH4A1P30038 563 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 IL12RB1P42701 662 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 DYNLT1P63172 113 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 FPGSQ05932 587 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 BST1Q10588 318 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 FASTKD3Q14CZ7 662 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 TARBP2Q15633 366 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 CYP1B1Q16678 543 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 MTX3Q5HYI7 312 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 NOL9Q5SY16 702 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 GRTP1Q5TC63 336 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 TDRD10Q5VZ19 366 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 CAMK1DQ8IU85 385 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 ZBTB45Q96K62 511 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 ZNF597Q96LX8 424 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CDRT15Q96T59 188 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CSF3RQ99062 836 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 MAPRE3Q9UPY8 281 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 WBP11Q9Y2W2 641 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 CNTNAP2Q9UHC6 1331 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 HTTP42858 3142 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 CIB4A0PJX0 185 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 SAGE2PA6NJ88 616 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 KRT37O76014 449 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 ASS1P00966 412 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 MT-ND3P03897 115 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 OSBPP22059 807 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 GDI2P50395 445 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 GPC5P78333 572 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 ILF2Q12905 390 aaKnown RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 TMEM65Q6PI78 240 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 ZNF564Q8TBZ8 553 aaPredicted RBP10.85□□□□□ -0.67
CLK3-226ENST00000569406 LRTOMTQ8WZ04 291 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 LPPQ93052 612 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 SCYL1Q96KG9 808 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 COPG2Q9UBF2 871 aa10.85□□□□□ -0.67
CLK3-226ENST00000569406 OR6C65A6NJZ3 312 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 ZBTB42B2RXF5 422 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 SOCS7O14512 581 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 USP2O75604 605 aaPredicted RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 FDX1P10109 184 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 NCAM1P13591 858 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 CD53P19397 219 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 GLRA2P23416 452 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 EDNRBP24530 442 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 NUDT2P50583 147 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 SSTP61278 116 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 MGAT3Q09327 533 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 EFR3AQ14156 821 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 POLD3Q15054 466 aaPredicted RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 FAM160B1Q5W0V3 765 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 SCML4Q8N228 414 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 NSUN6Q8TEA1 469 aaKnown RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 ATP6V1E2Q96A05 226 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 CMTM5Q96DZ9 223 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 DGCR6LQ9BY27 220 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 MALT1Q9UDY8 824 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 SNCAIPQ9Y6H5 919 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 PRSS47A8MTI9 375 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 CSDE1O75534 798 aaKnown RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 ICAM3P32942 547 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 ARL2P36404 184 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 PTP4A2Q12974 167 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 DMP1Q13316 513 aaPredicted RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 CCINQ13939 588 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 CHI3L2Q15782 390 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 ZACNQ401N2 412 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 SYCE2Q6PIF2 218 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 FBXL13Q8NEE6 735 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 NLGN2Q8NFZ4 835 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 RSAD2Q8WXG1 361 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 KCTD14Q9BQ13 255 aaPredicted RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 CHST7Q9NS84 486 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 ACOXLQ9NUZ1 547 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 SLC9A2Q9UBY0 812 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 PTBP2Q9UKA9 531 aaKnown RBP10.84□□□□□ -0.67
CLK3-226ENST00000569406 PCDHGA2Q9Y5H1 932 aa10.84□□□□□ -0.67
CLK3-226ENST00000569406 F8W036 122 aa10.83□□□□□ -0.67
CLK3-226ENST00000569406 AGRPO00253 132 aa10.83□□□□□ -0.67
CLK3-226ENST00000569406 BCAS1O75363 584 aaPredicted RBP10.83□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms