RNA–Protein interactions for RNA: ENST00000568497.6

CLN3-235, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 758 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-235ENST00000568497 CPEB1Q9BZB8 566 aaKnown RBP13.93□□□□□ -0.18
CLN3-235ENST00000568497 ATP13A3Q9H7F0 1226 aa13.93□□□□□ -0.18
CLN3-235ENST00000568497 POM121BA6NF01 834 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 H7C0C1 242 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 SLC7A4O43246 635 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 LATO43561 262 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 NEBLO76041 1014 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 MT-CYBP00156 380 aaPredicted RBP13.92□□□□□ -0.18
CLN3-235ENST00000568497 RBL1P28749 1068 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 SERPINA4P29622 427 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 CXCR5P32302 372 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 CD68P34810 354 aaPredicted RBP13.92□□□□□ -0.18
CLN3-235ENST00000568497 ATP5OP48047 213 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 SKOR1P84550 965 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 WASHC5Q12768 1159 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 GALNT3Q14435 633 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 GSE1Q14687 1217 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 RFTN1Q14699 578 aaPredicted RBP13.92□□□□□ -0.18
CLN3-235ENST00000568497 PRKD1Q15139 912 aaPredicted RBP13.92□□□□□ -0.18
CLN3-235ENST00000568497 UGP2Q16851 508 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 TMEM259Q4ZIN3 620 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 GCNT7Q6ZNI0 430 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 USP53Q70EK8 1073 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 REXO1L1PQ8IX06 675 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 OR13H1Q8NG92 308 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 RBM41Q96IZ5 413 aaKnown RBP13.92□□□□□ -0.18
CLN3-235ENST00000568497 CCNL2Q96S94 520 aaPredicted RBP13.92□□□□□ -0.18
CLN3-235ENST00000568497 OSBPL1AQ9BXW6 950 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 PREBQ9HCU5 417 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 KCNK4Q9NYG8 393 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 SMARCAL1Q9NZC9 954 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 B4GALT6Q9UBX8 382 aa13.92□□□□□ -0.18
CLN3-235ENST00000568497 SBDSQ9Y3A5 250 aaKnown RBP eCLIP13.92□□□□□ -0.18
CLN3-235ENST00000568497 LRRK2Q5S007 2527 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 TSPAN11A1L157 253 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 ENO4A6NNW6 628 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 RIOK3O14730 519 aaKnown RBP13.91□□□□□ -0.18
CLN3-235ENST00000568497 MAGEC1O60732 1142 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 CPP00450 1065 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 SLC4A1P02730 911 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 FAM87AP0C7U9 286 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 GM2AP17900 193 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 MX2P20592 715 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 LHCGRP22888 699 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 IGFALSP35858 605 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 LIG3P49916 1009 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 TFDP2Q14188 446 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 PDK1Q15118 436 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 PPP2R5EQ16537 467 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 LINC00303Q3SY05 128 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 KCTD16Q68DU8 428 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 BBS12Q6ZW61 710 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 TRIM69Q86WT6 500 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 MFSD2AQ8NA29 543 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 LPCAT1Q8NF37 534 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 CXorf40AQ8TE69 158 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 TFB1MQ8WVM0 346 aaKnown RBP13.91□□□□□ -0.18
CLN3-235ENST00000568497 P3H4Q92791 437 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 ECHDC3Q96DC8 303 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 HES6Q96HZ4 224 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 PDLIM2Q96JY6 352 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 BMFQ96LC9 184 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 IL12RB2Q99665 862 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 SLC17A9Q9BYT1 436 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 ATP8A1Q9Y2Q0 1164 aa13.91□□□□□ -0.18
CLN3-235ENST00000568497 CCDC66A2RUB6 948 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 NPIPB15A6NHN6 443 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 KRT86O43790 486 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 LZTS3O60299 673 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 PMPCBO75439 489 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 PGLSO95336 258 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 PRLP01236 227 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 PCCBP05166 539 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 ZFXP17010 805 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 NFKB1P19838 968 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 TGM2P21980 687 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 MMP12P39900 470 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 CSNK1DP48730 415 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 RENBPP51606 427 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 EIF3EP60228 445 aaKnown RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 AP1S1P61966 158 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 IFI35P80217 286 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 NSUN2Q08J23 767 aaKnown RBP eCLIP13.9□□□□□ -0.18
CLN3-235ENST00000568497 CLN3Q13286 438 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 SNX1Q13596 522 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 SETMARQ53H47 684 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 FAXCQ5TGI0 409 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 NAPEPLDQ6IQ20 393 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 TIGD7Q6NT04 549 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 HSD11B1LQ7Z5J1 315 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 PTAR1Q7Z6K3 402 aaPredicted RBP13.9□□□□□ -0.18
CLN3-235ENST00000568497 ZNF567Q8N184 647 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 SLC22A18ASQ8N1D0 253 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 PLA2G15Q8NCC3 412 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 OR4C6Q8NH72 309 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 MAPK15Q8TD08 544 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 PIH1D2Q8WWB5 315 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 C1orf54Q8WWF1 131 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 FEM1CQ96JP0 617 aa13.9□□□□□ -0.18
CLN3-235ENST00000568497 SLC46A1Q96NT5 459 aa13.9□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms