RNA–Protein interactions for RNA: ENST00000568076.6

CLN3-230, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,968 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-230ENST00000568076 IL21Q9HBE4 155 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 LHX3Q9UBR4 397 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 ATP11BQ9Y2G3 1177 aa20.26■□□□□ 0.83
CLN3-230ENST00000568076 PLXNA4Q9HCM2 1894 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 MKI67P46013 3256 aaKnown RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 A0A0U1RQS6 177 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 H0Y626 953 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 GFRA2O00451 464 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 URODP06132 367 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 CES1P23141 567 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 NFKB2Q00653 900 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 OR4D1Q15615 310 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 TXNDC8Q6A555 127 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 HPS6Q86YV9 775 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 PELI3Q8N2H9 469 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 RYBPQ8N488 228 aaPredicted RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 GIMAP7Q8NHV1 300 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 RP9Q8TA86 221 aaKnown RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 WFDC5Q8TCV5 224 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 N4BP2L2Q92802 583 aaPredicted RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 ZNF333Q96JL9 665 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 EML4Q9HC35 981 aaKnown RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 ZBTB26Q9HCK0 441 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 OR51B4Q9Y5P0 310 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 UBA6A0AVT1 1052 aaPredicted RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 ANKRD66B4E2M5 251 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 AIM2O14862 343 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 PENKP01210 267 aaPredicted RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 TSPAN8P19075 237 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 ADSLP30566 484 aaPredicted RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 ELF1P32519 619 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 ABL2P42684 1182 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 EPHB3P54753 998 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 SATB1Q01826 763 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 CYLC2Q14093 348 aaPredicted RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 EML3Q32P44 896 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 UNC50Q53HI1 259 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 NCEH1Q6PIU2 408 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 ZNF783Q6ZMS7 281 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 DDX53Q86TM3 631 aaKnown RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 EXT2Q93063 718 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 CCDC124Q96CT7 223 aaKnown RBP20.25■□□□□ 0.83
CLN3-230ENST00000568076 MEAF6Q9HAF1 191 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 TMEM39AQ9NV64 488 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 SPG21Q9NZD8 308 aa20.25■□□□□ 0.83
CLN3-230ENST00000568076 C2orf81A6NN90 581 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 NVLO15381 856 aaKnown RBP20.24■□□□□ 0.83
CLN3-230ENST00000568076 LATS1O95835 1130 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 OLFM2O95897 454 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 SPATA31D3P0C874 917 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 MTHFD2P13995 350 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 ANPEPP15144 967 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 FMO4P31512 558 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 NUDT2P50583 147 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 PDAP1Q13442 181 aaKnown RBP20.24■□□□□ 0.83
CLN3-230ENST00000568076 CCNIQ14094 377 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 Q6ZNB5 142 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 SPATA31D4Q6ZUB0 917 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 PIANPQ8IYJ0 282 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 FBXW8Q8N3Y1 598 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 CEP70Q8NHQ1 597 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 FEM1AQ9BSK4 669 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 FKBPLQ9UIM3 349 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 IKZF3Q9UKT9 509 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 PPM1HQ9ULR3 514 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 LTBP2Q14767 1821 aa20.24■□□□□ 0.83
CLN3-230ENST00000568076 CCDC189A1A4V9 331 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 TEX28O15482 410 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 SUPT7LO94864 414 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 LPOP22079 712 aaPredicted RBP20.23■□□□□ 0.83
CLN3-230ENST00000568076 ITGB8P26012 769 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 MTTPP55157 894 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 C1orf53Q5VUE5 145 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 PSAPL1Q6NUJ1 521 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 CYHR1Q6ZMK1 362 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 DNAJC9Q8WXX5 260 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 ALG14Q96F25 216 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 FAR2Q96K12 515 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 ATOH8Q96SQ7 321 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 VPS28Q9UK41 221 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 POMPQ9Y244 141 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 FAM50BQ9Y247 325 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 FCF1Q9Y324 198 aaKnown RBP20.23■□□□□ 0.83
CLN3-230ENST00000568076 CPQQ9Y646 472 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 UBXN8O00124 270 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 RHOBTB1O94844 696 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 LUC7L3O95232 432 aaKnown RBP20.23■□□□□ 0.83
CLN3-230ENST00000568076 CSKP41240 450 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 HERVK_113P63132 956 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 HERC3Q15034 1050 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 TCHHL1Q5QJ38 904 aaPredicted RBP20.23■□□□□ 0.83
CLN3-230ENST00000568076 PAQR3Q6TCH7 311 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 CHSY3Q70JA7 882 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 TTC30BQ8N4P2 665 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 EFHBQ8N7U6 833 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 RHEBL1Q8TAI7 183 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 BHMTQ93088 406 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 RCN3Q96D15 328 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 TRMOQ9BU70 441 aa20.23■□□□□ 0.83
CLN3-230ENST00000568076 ERVK-6Q9BXR3 956 aa20.23■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms