RNA–Protein interactions for RNA: ENST00000567992.1

CLK3-220, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 603 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-220ENST00000567992 RAVER1Q8IY67 606 aaKnown RBP9.79□□□□□ -0.84
CLK3-220ENST00000567992 RBFAQ8N0V3 343 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 NDUFAF2Q8N183 169 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 SLC35F6Q8N357 371 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 SLC25A45Q8N413 288 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 FAM71DQ8N9W8 422 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 WDR24Q96S15 920 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 AGAP2Q99490 1192 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 TMEM121Q9BTD3 319 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 APOOQ9BUR5 198 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 LGR4Q9BXB1 951 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ADGRE3Q9BY15 652 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ABCG8Q9H221 673 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 TCEAL2Q9H3H9 227 aaPredicted RBP9.79□□□□□ -0.84
CLK3-220ENST00000567992 UCKL1Q9NWZ5 548 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 TRMT1Q9NXH9 659 aaKnown RBP9.79□□□□□ -0.84
CLK3-220ENST00000567992 CD84Q9UIB8 345 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 ZNF711Q9Y462 761 aa9.79□□□□□ -0.84
CLK3-220ENST00000567992 FRYQ5TBA9 3013 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 SPAARA0A1B0GVQ0 90 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 MED19A0JLT2 244 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 TMEM202A6NGA9 273 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 AURKAO14965 403 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 GCATO75600 419 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 ZNF189O75820 626 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 METTL18O95568 372 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 EPOP01588 193 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 FGGP02679 453 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 ATP1A1P05023 1023 aaKnown RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 HOXC4P09017 264 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 TSHRP16473 764 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 DGKAP23743 735 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 CXCR5P32302 372 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 GRK6P43250 576 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 SPINT3P49223 89 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 THOP1P52888 689 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 CCDC173Q0VFZ6 552 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 MSLNQ13421 630 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 PTK2BQ14289 1009 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 SLC1A5Q15758 541 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 ALG11Q2TAA5 492 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 KCTD11Q693B1 232 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 ERMP1Q7Z2K6 904 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 TMC3Q7Z5M5 1100 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 GLRX5Q86SX6 157 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 NRSN1Q8IZ57 195 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 TTC30BQ8N4P2 665 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 ZNF548Q8NEK5 533 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 IPMKQ8NFU5 416 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 SETD7Q8WTS6 366 aaKnown RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 PTCD2Q8WV60 388 aaKnown RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 C1orf54Q8WWF1 131 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 SCAMP4Q969E2 229 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 PDXPQ96GD0 296 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 LRRC61Q9BV99 259 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 TEX101Q9BY14 249 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 FRMD8P1Q9BZ68 369 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 WDR26Q9H7D7 661 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 MAGEE1Q9HCI5 957 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 FGF22Q9HCT0 170 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 DNAJC28Q9NX36 388 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 TOR4AQ9NXH8 423 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 KCTD5Q9NXV2 234 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 NFKBIL1Q9UBC1 381 aaPredicted RBP9.78□□□□□ -0.84
CLK3-220ENST00000567992 JRKLQ9Y4A0 524 aa9.78□□□□□ -0.84
CLK3-220ENST00000567992 TRIM38O00635 465 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 FANCGO15287 622 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 ANXA9O76027 345 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 STK10O94804 968 aaKnown RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 DKK1O94907 266 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 AGTP01019 485 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 FGF1P05230 155 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 ITGAVP06756 1048 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 CELA2BP08218 269 aaPredicted RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 MYCLP1P12525 358 aaPredicted RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 JUNDP17535 347 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 HLA-DPA1P20036 260 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 GEMP55040 296 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 CDK3Q00526 305 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 SUZ12Q15022 739 aaKnown RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 CCNG2Q16589 344 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 P3H1Q32P28 736 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 ZNF569Q5MCW4 686 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 HENMT1Q5T8I9 393 aaKnown RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 N4BP2L1Q5TBK1 243 aaPredicted RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 RAET1GQ6H3X3 334 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 DENND5AQ6IQ26 1287 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 DRICH1Q6PGQ1 229 aaPredicted RBP9.77□□□□□ -0.85
CLK3-220ENST00000567992 ADAMTSL4Q6UY14 1074 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 RANBP10Q6VN20 620 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 PRUNE1Q86TP1 453 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 NLRP8Q86W28 1048 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 HEATR4Q86WZ0 1026 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 PHACTR4Q8IZ21 702 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 RASGEF1CQ8N431 466 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 SLC25A41Q8N5S1 370 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 EID2Q8N6I1 236 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 PRELID2Q8N945 189 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 GLIS1Q8NBF1 620 aa9.77□□□□□ -0.85
CLK3-220ENST00000567992 RHBDD1Q8TEB9 315 aa9.77□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms