RNA–Protein interactions for RNA: ENST00000565688.5

CLN3-218, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 650 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-218ENST00000565688 HAUS2Q9NVX0 235 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 ATXN7L1Q9ULK2 861 aaPredicted RBP18.71■□□□□ 0.59
CLN3-218ENST00000565688 PPIL1Q9Y3C6 166 aa18.71■□□□□ 0.59
CLN3-218ENST00000565688 NPIPB15A6NHN6 443 aaPredicted RBP18.7■□□□□ 0.58
CLN3-218ENST00000565688 NVLO15381 856 aaKnown RBP18.7■□□□□ 0.58
CLN3-218ENST00000565688 LHCGRP22888 699 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 ZBED6P86452 979 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 CDK3Q00526 305 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 DPTQ07507 201 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 CLPPQ16740 277 aaPredicted RBP18.7■□□□□ 0.58
CLN3-218ENST00000565688 HADHQ16836 314 aaKnown RBP18.7■□□□□ 0.58
CLN3-218ENST00000565688 ZNF605Q86T29 641 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 FAM71BQ8TC56 605 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 CMKLR1Q99788 373 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 FUCA2Q9BTY2 467 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 POLR1EQ9GZS1 481 aaKnown RBP18.7■□□□□ 0.58
CLN3-218ENST00000565688 NT5MQ9NPB1 228 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 LOXL2Q9Y4K0 774 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 PIEZO2Q9H5I5 2752 aa18.7■□□□□ 0.58
CLN3-218ENST00000565688 GOLGA6CA6NDK9 693 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 GOLGA6BA6NDN3 693 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 GOLGA6DP0CG33 693 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 CES1P23141 567 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 IL4RP24394 825 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 PBX1P40424 430 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 SSR1P43307 286 aaKnown RBP18.69■□□□□ 0.58
CLN3-218ENST00000565688 GNPDA1P46926 289 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 UBASH3AP57075 661 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 FANCCQ00597 558 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 ZSCAN23Q3MJ62 389 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 CCDC122Q5T0U0 273 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 RAET1GQ6H3X3 334 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 Q6ZVL8 140 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 ZNF438Q7Z4V0 828 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 C17orf82Q86X59 251 aaPredicted RBP18.69■□□□□ 0.58
CLN3-218ENST00000565688 SFTPA2Q8IWL1 248 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 ZDHHC1Q8WTX9 485 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 PIH1D2Q8WWB5 315 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 TTC9Q92623 222 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 BTBD6Q96KE9 485 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 SPATS2LQ9NUQ6 558 aaKnown RBP18.69■□□□□ 0.58
CLN3-218ENST00000565688 GOLGA6AQ9NYA3 693 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 TAAR2Q9P1P5 351 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 PISDQ9UG56 409 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 CAPN11Q9UMQ6 739 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 SUFUQ9UMX1 484 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 SLC17A4Q9Y2C5 497 aa18.69■□□□□ 0.58
CLN3-218ENST00000565688 UNC13CQ8NB66 2214 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 A0A087X0T9 212 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 RHPN2P1A8MT19 583 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 CPNE6O95741 557 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 FGF1P05230 155 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 PYGLP06737 847 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 IVLP07476 585 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 FAM228BP0C875 321 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 HGFP14210 728 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 ZNF30P17039 623 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 GARSP41250 739 aaKnown RBP18.68■□□□□ 0.58
CLN3-218ENST00000565688 B4GALNT1Q00973 533 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 ITKQ08881 620 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 NFKBIBQ15653 356 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 MAP9Q49MG5 647 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 TIGD7Q6NT04 549 aaPredicted RBP18.68■□□□□ 0.58
CLN3-218ENST00000565688 ALKBH5Q6P6C2 394 aaKnown RBP18.68■□□□□ 0.58
CLN3-218ENST00000565688 TECPR1Q7Z6L1 1165 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 TSPAN33Q86UF1 283 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 PIM3Q86V86 326 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 NRROSQ86YC3 692 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 SLITRK4Q8IW52 837 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 FATE1Q969F0 183 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 SEMA3CQ99985 751 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 SUDS3Q9H7L9 328 aaPredicted RBP18.68■□□□□ 0.58
CLN3-218ENST00000565688 CBX8Q9HC52 389 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 AKAP7Q9P0M2 348 aaPredicted RBP18.68■□□□□ 0.58
CLN3-218ENST00000565688 AMACRQ9UHK6 382 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 DNPEPQ9ULA0 475 aa18.68■□□□□ 0.58
CLN3-218ENST00000565688 LUC7L2Q9Y383 392 aaKnown RBP18.68■□□□□ 0.58
CLN3-218ENST00000565688 FZD6O60353 706 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 FUCA1P04066 466 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 CTPS1P17812 591 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 CA4P22748 312 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 GPR3P46089 330 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 GPR1P46091 355 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 GALNT2Q10471 571 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 MMRN1Q13201 1228 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 BIRC2Q13490 618 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 NR1D2Q14995 579 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 PAFAH1B3Q15102 231 aaKnown RBP18.67■□□□□ 0.58
CLN3-218ENST00000565688 PHF19Q5T6S3 580 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 ALG1LQ6GMV1 187 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 ADAMTSL4Q6UY14 1074 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 ZNF765Q7L2R6 523 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 NLRP8Q86W28 1048 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 CPLX3Q8WVH0 158 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 CDH19Q9H159 772 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 SEPT10Q9P0V9 454 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 LCMT1Q9UIC8 334 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 AHCTF1Q8WYP5 2266 aa18.67■□□□□ 0.58
CLN3-218ENST00000565688 SETXQ7Z333 2677 aaKnown RBP18.67■□□□□ 0.58
CLN3-218ENST00000565688 TENM4Q6N022 2769 aa18.66■□□□□ 0.58
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms