RNA–Protein interactions for RNA: ENST00000561689.6

CLN3-209, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,957 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-209ENST00000561689 CEP97Q8IW35 865 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 LRRC34Q8IZ02 419 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 SCRN2Q96FV2 425 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 NECTIN4Q96NY8 510 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 OMDQ99983 421 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 ZDHHC4Q9NPG8 344 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 IL36AQ9UHA7 158 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 CD207Q9UJ71 328 aa21.26■□□□□ 0.99
CLN3-209ENST00000561689 ARNTLO00327 626 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 MPOP05164 745 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 DHRS4L1P0CG22 281 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 SOX9P48436 509 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 IRX4P78413 519 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 PEX6Q13608 980 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 POM121L1PQ3SYA9 428 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 CRTC1Q6UUV9 634 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 USP45Q70EL2 814 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 MTSS1LQ765P7 747 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 PLD6Q8N2A8 252 aaKnown RBP21.25■□□□□ 0.99
CLN3-209ENST00000561689 BRD9Q9H8M2 597 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 ZNF358Q9NW07 568 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 DCDC2Q9UHG0 476 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 BRWD1Q9NSI6 2320 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 PRUNE2Q8WUY3 3088 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 NDUFAB1O14561 156 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 GLRA3O75311 464 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 STC1P52823 247 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 TAS2R39P59534 338 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 N4BP2L1Q5TBK1 243 aaPredicted RBP21.25■□□□□ 0.99
CLN3-209ENST00000561689 GALNT7Q86SF2 657 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 SPNS2Q8IVW8 549 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 PIANPQ8IYJ0 282 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 SUSD6Q92537 303 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 EPS15L1Q9UBC2 864 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 TLK1Q9UKI8 766 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 EMCNQ9ULC0 261 aa21.25■□□□□ 0.99
CLN3-209ENST00000561689 SOX1O00570 391 aaPredicted RBP21.24■□□□□ 0.99
CLN3-209ENST00000561689 GPR39O43194 453 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 KAT7O95251 611 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 FAM107AO95990 144 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 STMN1P16949 149 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 TAC1P20366 129 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 SERPINB4P48594 390 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 CSRP3P50461 194 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 CLCN5P51795 746 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 HTR4Q13639 388 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 ZNF234Q14588 700 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 PDK4Q16654 411 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 ZRANB3Q5FWF4 1079 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 PSAPL1Q6NUJ1 521 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 CABS1Q96KC9 395 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 LYSMD1Q96S90 227 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 OLFM1Q99784 485 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 FBRSL1Q9HCM7 1045 aaKnown RBP21.24■□□□□ 0.99
CLN3-209ENST00000561689 PPIL1Q9Y3C6 166 aa21.24■□□□□ 0.99
CLN3-209ENST00000561689 COL4A3Q01955 1670 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 GOLGA8CPA6NN73 597 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 DNAJC6O75061 913 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 SLC35E2BP0CK96 405 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 OGNP20774 298 aaKnown RBP21.23■□□□□ 0.99
CLN3-209ENST00000561689 DRD4P21917 467 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 RAB10P61026 200 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 XIAPP98170 497 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 TYSND1Q2T9J0 566 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 LRRC66Q68CR7 880 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 TPRG1Q6ZUI0 275 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 CPLX4Q7Z7G2 160 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 MCCC1Q96RQ3 725 aaPredicted RBP21.23■□□□□ 0.99
CLN3-209ENST00000561689 TMEM216Q9P0N5 145 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 A0A1W2PPC1 479 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 H7C0S8 307 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 LHCGRP22888 699 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 POLD2P49005 469 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 SLC12A2P55011 1212 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 POLR2LP62875 67 aaKnown RBP21.23■□□□□ 0.99
CLN3-209ENST00000561689 POU4F1Q01851 419 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 ZKSCAN8Q15776 578 aaPredicted RBP21.23■□□□□ 0.99
CLN3-209ENST00000561689 HECTD2Q5U5R9 776 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 BRAT1Q6PJG6 821 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 FAM151BQ6UXP7 276 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 SERPINA13PQ6UXR4 307 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 STK40Q8N2I9 435 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 CCDC63Q8NA47 563 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 ERLEC1Q96DZ1 483 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 MECRQ9BV79 373 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 B4GALT6Q9UBX8 382 aa21.23■□□□□ 0.99
CLN3-209ENST00000561689 KIF26AQ9ULI4 1882 aaPredicted RBP21.23■□□□□ 0.99
CLN3-209ENST00000561689 A0A1W2PQ67 120 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 PALM2-AKAP2B1ALY0 433 aaPredicted RBP21.22■□□□□ 0.99
CLN3-209ENST00000561689 ANHXE9PGG2 379 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 HNRNPA1L2Q32P51 320 aaKnown RBP21.22■□□□□ 0.99
CLN3-209ENST00000561689 TAF1BQ53T94 588 aaPredicted RBP21.22■□□□□ 0.99
CLN3-209ENST00000561689 C9orf64Q5T6V5 341 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 ZNF549Q6P9A3 640 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 KYAT3Q6YP21 454 aaKnown RBP21.22■□□□□ 0.99
CLN3-209ENST00000561689 CLEC14AQ86T13 490 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 LRRC8CQ8TDW0 803 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 ZNF473Q8WTR7 871 aaKnown RBP21.22■□□□□ 0.99
CLN3-209ENST00000561689 TMEM245Q9H330 911 aa21.22■□□□□ 0.99
CLN3-209ENST00000561689 FGFR1OP2Q9NVK5 253 aa21.22■□□□□ 0.99
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms