RNA–Protein interactions for RNA: ENST00000560427.1

NEDD8-208, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 2

Gene NEDD8, Length 654 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-208ENST00000560427 C19orf43Q9BQ61 176 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 WDR26Q9H7D7 661 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 ARNT2Q9HBZ2 717 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 DLL3Q9NYJ7 618 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 RNF14Q9UBS8 474 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 FNDC3AQ9Y2H6 1198 aaKnown RBP12.99□□□□□ -0.33
NEDD8-208ENST00000560427 SAR1BQ9Y6B6 198 aa12.99□□□□□ -0.33
NEDD8-208ENST00000560427 F5H423 210 aaPredicted RBP12.98□□□□□ -0.33
NEDD8-208ENST00000560427 H3BM21 787 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 FLRT2O43155 660 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 PPFIA2O75334 1257 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 CLDN7O95471 211 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 METTL18O95568 372 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 AP2A1O95782 977 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 KELP23276 732 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 EPHA8P29322 1005 aaPredicted RBP12.98□□□□□ -0.33
NEDD8-208ENST00000560427 HMGCLP35914 325 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 SPINT3P49223 89 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 FNTAP49354 379 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 INPP5AQ14642 412 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 PUM1Q14671 1186 aaKnown RBP eCLIP12.98□□□□□ -0.332e-9■■□□□ 12.1
NEDD8-208ENST00000560427 NFATC4Q14934 902 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 RSPO4Q2I0M5 234 aaPredicted RBP12.98□□□□□ -0.33
NEDD8-208ENST00000560427 DENND2CQ68D51 928 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 PDPK2PQ6A1A2 396 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 PNCKQ6P2M8 343 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 Q6ZVL8 140 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 GSTA5Q7RTV2 222 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 LYSMD3Q7Z3D4 306 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 TMC3Q7Z5M5 1100 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 LINC00523Q86TU6 105 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 DTX3LQ8TDB6 740 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 AP2M1Q96CW1 435 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 TBL1YQ9BQ87 522 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 FICDQ9BVA6 458 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 GPR63Q9BZJ6 419 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 EIF2B3Q9NR50 452 aaKnown RBP12.98□□□□□ -0.33
NEDD8-208ENST00000560427 TM7SF3Q9NS93 570 aa12.98□□□□□ -0.33
NEDD8-208ENST00000560427 PHF2O75151 1096 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 SUN1O94901 812 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 AGTP01019 485 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 CSF2P04141 144 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 MYCLP1P12525 358 aaPredicted RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 NME1P15531 152 aaKnown RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 CSRP1P21291 193 aaKnown RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 BLKP51451 505 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 HNRNPKP61978 463 aaKnown RBP eCLIP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 ETF1P62495 437 aaKnown RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 PDE1BQ01064 536 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 SEMA5AQ13591 1074 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 FZD2Q14332 565 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 PTPRRQ15256 657 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 FAM182AQ5T1J6 154 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 RAET1GQ6H3X3 334 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 ADAMTSL4Q6UY14 1074 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 DBX2Q6ZNG2 339 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 SLC25A41Q8N5S1 370 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 GRK7Q8WTQ7 553 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 BTN2A2Q8WVV5 523 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 MAGOHBQ96A72 148 aaKnown RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 TRIM44Q96DX7 344 aaPredicted RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 MS4A14Q96JA4 679 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 PLEKHG4BQ96PX9 1271 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 SMIM14Q96QK8 99 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 APOOQ9BUR5 198 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 TEX101Q9BY14 249 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 ABCG8Q9H221 673 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 FAM83DQ9H4H8 585 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 IL21RQ9HBE5 538 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 PHPT1Q9NRX4 125 aaPredicted RBP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP12.97□□□□□ -0.33
NEDD8-208ENST00000560427 CEP250Q9BV73 2442 aa12.97□□□□□ -0.33
NEDD8-208ENST00000560427 C2orf81A6NN90 581 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 E7EVH7 732 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 AP3B1O00203 1094 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 TNFRSF10CO14798 259 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 TM4SF5O14894 197 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 CRTAMO95727 393 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 PIRTP0C851 137 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 CHRNA4P43681 627 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 GPR1P46091 355 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 TAF1AQ15573 450 aaPredicted RBP12.96□□□□□ -0.33
NEDD8-208ENST00000560427 UAP1L1Q3KQV9 507 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 HENMT1Q5T8I9 393 aaKnown RBP12.96□□□□□ -0.33
NEDD8-208ENST00000560427 GLT6D1Q7Z4J2 308 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 PLA2G15Q8NCC3 412 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 OR2I1PQ8NGU4 316 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 BRSK1Q8TDC3 778 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 BLOC1S5Q8TDH9 187 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 SAP25Q8TEE9 199 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 EID2BQ96D98 161 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 WDR92Q96MX6 357 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 RUNDC3BQ96NL0 473 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 ZSCAN5AQ9BUG6 496 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 AP1M1Q9BXS5 423 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 SLC32A1Q9H598 525 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 RAB6BQ9NRW1 208 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 SHOC2Q9UQ13 582 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 OR1A2Q9Y585 309 aa12.96□□□□□ -0.33
NEDD8-208ENST00000560427 SPO11Q9Y5K1 396 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms