RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 CABIN1Q9Y6J0 2220 aa9.23□□□□□ -0.93
LDLR-210ENST00000559340 TP53BP1Q12888 1972 aaPredicted RBP9.23□□□□□ -0.93
LDLR-210ENST00000559340 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 A0A1W2PPC4 97 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TCRBV7S3A2A0A539 114 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 GOLGA8MH3BSY2 632 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 FPGTO14772 594 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 SLC31A1O15431 190 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 LATO43561 262 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 RECQL5O94762 991 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 TMEM63AO94886 807 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TTC4O95801 387 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PAK4O96013 591 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 RHOXF2BP0C7M4 288 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PIRTP0C851 137 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TEAD1P28347 426 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PPARGP37231 505 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 SPINT3P49223 89 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 DCDC1P59894 354 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 MRPS25P82663 173 aaKnown RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 OVGP1Q12889 678 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 CBLBQ13191 982 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 STAT4Q14765 748 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 POU6F1Q14863 301 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 LRRC14Q15048 493 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TEAD4Q15561 434 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 CDKN3Q16667 212 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PLK5Q496M5 336 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TMEM259Q4ZIN3 620 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 ANKRD22Q5VYY1 191 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 LYSMD4Q5XG99 296 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PMS2CLQ68D20 193 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PDPK2PQ6A1A2 396 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PRR23BQ6ZRT6 265 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 LYSMD3Q7Z3D4 306 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TSPAN33Q86UF1 283 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 DCP2Q8IU60 420 aaKnown RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 TMEFF1Q8IYR6 380 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TTC30BQ8N4P2 665 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 ZCCHC9Q8N567 271 aaKnown RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 FAM160A2Q8N612 972 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 EIF1ADQ8N9N8 165 aaKnown RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 IFT81Q8WYA0 676 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.22□□□□□ -0.93
LDLR-210ENST00000559340 DNASE2BQ8WZ79 361 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 SNX19Q92543 992 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 ART4Q93070 314 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.22□□□□□ -0.93
LDLR-210ENST00000559340 BIRC7Q96CA5 298 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 AP2M1Q96CW1 435 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 NUS1Q96E22 293 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 DTD2Q96FN9 168 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 COQ10AQ96MF6 247 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 HSPA12BQ96MM6 686 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 SERPINB12Q96P63 405 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PLEKHG4BQ96PX9 1271 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 TTC1Q99614 292 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 RHOXF2Q9BQY4 288 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 CD93Q9NPY3 652 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 IL17CQ9P0M4 197 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 NFKBIL1Q9UBC1 381 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 DMGDHQ9UI17 866 aaKnown RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 SOX13Q9UN79 622 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 ITM2BQ9Y287 266 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 ZBTB32Q9Y2Y4 487 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 TCAF1Q9Y4C2 921 aa9.22□□□□□ -0.93
LDLR-210ENST00000559340 PTPRZ1P23471 2315 aaPredicted RBP9.22□□□□□ -0.93
LDLR-210ENST00000559340 ZFC3H1O60293 1989 aaKnown RBP9.21□□□□□ -0.93
LDLR-210ENST00000559340 FAM237BA0A1B0GVD1 139 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 PFDN6O15212 129 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SPINT1O43278 529 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SLC4A1P02730 911 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 POLBP06746 335 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 C1SP09871 688 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 TSHRP16473 764 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 BCKDHBP21953 392 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 LHCGRP22888 699 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 MGAT1P26572 445 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 MAT2AP31153 395 aaKnown RBP9.21□□□□□ -0.94
LDLR-210ENST00000559340 HOXD12P35452 270 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SPAM1P38567 509 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 GRIA1P42261 906 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 GPR1P46091 355 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 YPEL5P62699 121 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 PRAMEP78395 509 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SEMG2Q02383 582 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 DPTQ07507 201 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 MSLNQ13421 630 aaPredicted RBP9.21□□□□□ -0.94
LDLR-210ENST00000559340 MTM1Q13496 603 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 OLIG2Q13516 323 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 ITGA9Q13797 1035 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 BBS9Q3SYG4 887 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 CERCAMQ5T4B2 595 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 TSTD2Q5T7W7 516 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 SEL1L3Q68CR1 1132 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 Q6ZVL8 140 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 ERMP1Q7Z2K6 904 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 HSD11B1LQ7Z5J1 315 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 TECPR1Q7Z6L1 1165 aa9.21□□□□□ -0.94
LDLR-210ENST00000559340 CAND1Q86VP6 1230 aaKnown RBP9.21□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms