RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 TMEM202A6NGA9 273 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SERINC4A6NH21 518 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 GLOD5A6NK44 160 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 E5RJQ4 531 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 H7C0S8 307 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TIMM23O14925 209 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SCAMP1O15126 338 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 MDM4O15151 490 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 OGG1O15527 345 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SPRY1O43609 319 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 HCRTR2O43614 444 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TLX3O43711 291 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 TBX10O75333 385 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 PROP1O75360 226 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TADA2AO75478 443 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SLCO2B1O94956 709 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 BCL10O95999 233 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ICAM1P05362 532 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 CELA2AP08217 269 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SRPRAP08240 638 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 MMP2P08253 660 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 HOXB5P09067 269 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TRIM21P19474 475 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 SAT1P21673 171 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 CPT2P23786 658 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ACADLP28330 430 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 STAT2P52630 851 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 RRP1P56182 461 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 TAS2R40P59535 323 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SELENOVP59797 346 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 RPS13P62277 151 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 TMF1P82094 1093 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 PPP2R2BQ00005 443 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ID2Q02363 134 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 CALD1Q05682 793 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 SPOCK1Q08629 439 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ACSM2AQ08AH3 577 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 AIMP1Q12904 312 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 SLC10A2Q12908 348 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 TRAF1Q13077 416 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ITGADQ13349 1161 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 MTX1Q13505 466 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 GRAPQ13588 217 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 HNF4GQ14541 408 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 IL11RAQ14626 422 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 NAB2Q15742 525 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 NTRK2Q16620 822 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 KYNUQ16719 465 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 DUSP6Q16828 381 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 USP41Q3LFD5 358 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 FAM133BQ5BKY9 247 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 IGSF11Q5DX21 431 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 KRBOX4Q5JUW0 171 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 C1orf141Q5JVX7 400 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ACSM2BQ68CK6 577 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SLC18B1Q6NT16 456 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 B3GNT6Q6ZMB0 384 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SLC16A12Q6ZSM3 486 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 Q6ZSV7 163 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 KRT74Q7RTS7 529 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 KRT77Q7Z794 578 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SDCCAG8Q86SQ7 713 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 TMC8Q8IU68 726 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 CEP97Q8IW35 865 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SFTPA2Q8IWL1 248 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SCYL3Q8IZE3 742 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 FAM185AQ8N0U4 392 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 RBFAQ8N0V3 343 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 MMP21Q8N119 569 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 MIGA1Q8NAN2 632 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 NEXN-AS1Q8NBZ9 246 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SLC44A5Q8NCS7 719 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ZNF548Q8NEK5 533 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 APPL2Q8NEU8 664 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 OR8K5Q8NH50 307 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 HMGCLL1Q8TB92 370 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 BCAS4Q8TDM0 211 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TMEM174Q8WUU8 243 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 RND1Q92730 232 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SECISBP2LQ93073 1101 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 VPS33AQ96AX1 596 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TMCO6Q96DC7 493 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 PGAP3Q96FM1 320 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 CNDP2Q96KP4 475 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 ZNF570Q96NI8 536 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 DGAT2Q96PD7 388 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SLITRK1Q96PX8 696 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SMC6Q96SB8 1091 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 FIZ1Q96SL8 496 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ACOX2Q99424 681 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 FAM110AQ9BQ89 295 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 WDR83Q9BRX9 315 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 HAUS8Q9BT25 410 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 WACQ9BTA9 647 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TUBB6Q9BUF5 446 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 TEX12Q9BXU0 123 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 SPRY4Q9C004 299 aa1.67□□□□□ -2.14
USP3-209ENST00000558925 ALDH8A1Q9H2A2 487 aaPredicted RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 CLK4Q9HAZ1 481 aaKnown RBP1.67□□□□□ -2.14
USP3-209ENST00000558925 SEBOXQ9HB31 216 aaPredicted RBP1.67□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 33.4 ms