RNA–Protein interactions for RNA: ENST00000556689.5

SHMT2-223, Transcript of serine hydroxymethyltransferase 2, human

TSL 3

Gene SHMT2, Length 768 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHMT2-223	ENST00000556689	NLRC4	Q9NPP4	1024 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	SAMSN1	Q9NSI8	373 aa	Known RBP	12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	MAN2B2	Q9Y2E5	1009 aa		12.64	□□□□□ -0.39
SHMT2-223	ENST00000556689	TLN1	Q9Y490	2541 aa	Known RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	LRP4	O75096	1905 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	LOC107983988	A0A1B0GUW6	1196 aa	Predicted RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689		A0A1W2PQ67	120 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	DAPK3	O43293	454 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	IVL	P07476	585 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	PRKAR1A	P10644	381 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	NFKBIA	P25963	317 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	CSF2RB	P32927	897 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	MAN1A1	P33908	653 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	POLD2	P49005	469 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	PPM1F	P49593	454 aa	Predicted RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	JAM2	P57087	298 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	AP1S1	P61966	158 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	RPL7A	P62424	266 aa	Known RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	CDK3	Q00526	305 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	IL10RB	Q08334	325 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	SYCP1	Q15431	976 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	SKOR2	Q2VWA4	1001 aa	Predicted RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	C4orf17	Q53FE4	359 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	DENND2C	Q68D51	928 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	ANKS6	Q68DC2	871 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	DNAJC24	Q6P3W2	148 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	CBARP	Q8N350	705 aa	Predicted RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	FAM26E	Q8N5C1	309 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	APOBEC4	Q8WW27	367 aa	Known RBP	12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	ABHD17A	Q96GS6	310 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	NSMCE3	Q96MG7	304 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	MCEE	Q96PE7	176 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	PSMG3-AS1	Q96PY0	264 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	SPRY4	Q9C004	299 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	TMEM9	Q9P0T7	183 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	PDP2	Q9P2J9	529 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	DACH1	Q9UI36	760 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	SLC17A4	Q9Y2C5	497 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	ST14	Q9Y5Y6	855 aa		12.63	□□□□□ -0.39
SHMT2-223	ENST00000556689	PTPN13	Q12923	2485 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DOPEY2	Q9Y3R5	2298 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	LOC101059948	A0A1B0GTJ6	334 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	TCRBV5S1A1T	A0A578	114 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	GOLGA6C	A6NDK9	693 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	GOLGA6B	A6NDN3	693 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DFFA	O00273	331 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	EEF2K	O00418	725 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	HTRA2	O43464	458 aa	Predicted RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	HEXIM1	O94992	359 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	GOLGA6D	P0CG33	693 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	EEF1G	P26641	437 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	TEAD1	P28347	426 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	VIPR1	P32241	457 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ETV3	P41162	512 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ACTR1B	P42025	376 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	KLK7	P49862	253 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ACTR1A	P61163	376 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	MC2R	Q01718	297 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	MC1R	Q01726	317 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ABHD18	Q0P651	414 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	SEPT6	Q14141	434 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	CNGA3	Q16281	694 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DEFB109B	Q30KR1	87 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DPCR1	Q3MIW9	517 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	RAET1G	Q6H3X3	334 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DCUN1D2	Q6PH85	259 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	MON1B	Q7L1V2	547 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	KDELC2	Q7Z4H8	507 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	HSD11B1L	Q7Z5J1	315 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ARHGAP12	Q8IWW6	846 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	BMPER	Q8N8U9	685 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	OR10G6	Q8NH81	332 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	PDCD6IP	Q8WUM4	868 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	PTCD2	Q8WV60	388 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	SPOCK2	Q92563	424 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	RTP4	Q96DX8	246 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DTD2	Q96FN9	168 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	PSKH2	Q96QS6	385 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	SLC38A3	Q99624	504 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ZPBP	Q9BS86	351 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	ZMYND15	Q9H091	742 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	DHX35	Q9H5Z1	703 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	FAM207A	Q9NSI2	230 aa	Predicted RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	SEPT11	Q9NVA2	429 aa	Known RBP	12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	GPATCH2L	Q9NWQ4	482 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	GOLGA6A	Q9NYA3	693 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	TAB2	Q9NYJ8	693 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	PHTF1	Q9UMS5	762 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	AP4E1	Q9UPM8	1137 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	PCDHGC4	Q9Y5F7	938 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	LRRK1	Q38SD2	2015 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	SDK2	Q58EX2	2172 aa		12.62	□□□□□ -0.39
SHMT2-223	ENST00000556689	TRBV23OR9-2	A0A075B6M9	112 aa		12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689	TTC24	A2A3L6	582 aa	Predicted RBP	12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689		A8MU76	341 aa		12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689	EIF3CL	B5ME19	914 aa	Known RBP	12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689	DUX1	O43812	170 aa		12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689	CYP2A6	P11509	494 aa	Predicted RBP	12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689	ERCC2	P18074	760 aa		12.61	□□□□□ -0.39
SHMT2-223	ENST00000556689	GPR1	P46091	355 aa		12.61	□□□□□ -0.39

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