RNA–Protein interactions for RNA: ENST00000556486.5

SCFD1-220, Transcript of sec1 family domain containing 1, humanhuman

TSL 2

Gene SCFD1, Length 974 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-220ENST00000556486 GOLGA8SH3BPF8 625 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 NEMP1O14524 444 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 RAMP2O60895 175 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 LRIG2O94898 1065 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 SFTPCP11686 197 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 SDC4P31431 198 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 ZNF165P49910 485 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 THOP1P52888 689 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 POLE2P56282 527 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 HDAC4P56524 1084 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 JAM2P57087 298 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 SNRPD1P62314 119 aaKnown RBP10.09□□□□□ -0.79
SCFD1-220ENST00000556486 PTP4A2Q12974 167 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 KCNAB2Q13303 367 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 SGCGQ13326 291 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 PTK2BQ14289 1009 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 POLD3Q15054 466 aaPredicted RBP10.09□□□□□ -0.79
SCFD1-220ENST00000556486 CCDC14Q49A88 953 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 TCP11X2Q5H9J9 407 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 FAM72AQ5TYM5 149 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 TAF3Q5VWG9 929 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 NAA35Q5VZE5 725 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 FAM72DQ6L9T8 149 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 TRIM72Q6ZMU5 477 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 TMPRSS9Q7Z410 1059 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 FAM72BQ86X60 149 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 HID1Q8IV36 788 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 EMC1Q8N766 993 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 WDR48Q8TAF3 677 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 CPA5Q8WXQ8 436 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 TM6SF2Q9BZW4 377 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 ZDHHC6Q9H6R6 413 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 LRRC4CQ9HCJ2 640 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 LRP4O75096 1905 aa10.09□□□□□ -0.79
SCFD1-220ENST00000556486 ANKRD36A6QL64 1941 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 CLEC18AA5D8T8 446 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 NVLO15381 856 aaKnown RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 KDELR3O43731 214 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 PLEKP08567 350 aaPredicted RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 UNGP13051 313 aaPredicted RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 CHRNB2P17787 502 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 ITIH2P19823 946 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 IGFALSP35858 605 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 PEX5P50542 639 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 ATP11AP98196 1134 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 FMO1Q01740 532 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 TNP2Q05952 138 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 MPP2Q14168 576 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 NCAPHQ15003 741 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 C15orf59Q2T9L4 293 aaPredicted RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 MYLK3Q32MK0 819 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 RAB6CQ53S08 254 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 PHF19Q5T6S3 580 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 CDKAL1Q5VV42 579 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 FBXW10Q5XX13 1052 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 KCTD16Q68DU8 428 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 BORAQ6PGQ7 559 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 CLEC18BQ6UXF7 455 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 MACC1Q6ZN28 852 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 FAM26EQ8N5C1 309 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 ARL10Q8N8L6 244 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 CLEC18CQ8NCF0 446 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 C3orf20Q8ND61 904 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 OR6P1Q8NGX9 317 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 HCAR2Q8TDS4 363 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 SLC20A1Q8WUM9 679 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 RXFP2Q8WXD0 754 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 TSACCQ96A04 125 aaPredicted RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 TBC1D31Q96DN5 1066 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 NSUN5Q96P11 429 aaKnown RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 C1QTNF7Q9BXJ2 289 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 TTYH3Q9C0H2 523 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 RAB6CQ9H0N0 254 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 LRRN3Q9H3W5 708 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 NOL6Q9H6R4 1146 aaKnown RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 MBNL1Q9NR56 388 aaKnown RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 SAMSN1Q9NSI8 373 aaKnown RBP10.08□□□□□ -0.8
SCFD1-220ENST00000556486 HPCAL4Q9UM19 191 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 GPR34Q9UPC5 381 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 UNC13CQ8NB66 2214 aa10.08□□□□□ -0.8
SCFD1-220ENST00000556486 ICE1Q9Y2F5 2266 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 ESYT3A0FGR9 886 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 TSPAN11A1L157 253 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 FAM221AA4D161 298 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 WASH4PA8MWX3 477 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 KRIT1O00522 736 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 PDPK1O15530 556 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 UGT2B4P06133 528 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 CCL4P13236 92 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 SOX5P35711 763 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 CASRP41180 1078 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 AIF1P55008 147 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 YBEYP58557 167 aaPredicted RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 EIF3IQ13347 325 aaKnown RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 PARP15Q460N3 678 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 RWDD4Q6NW29 188 aaKnown RBP10.07□□□□□ -0.8
SCFD1-220ENST00000556486 LVRNQ6Q4G3 990 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 GDPD4Q6W3E5 623 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 LEKR1Q6ZMV7 388 aa10.07□□□□□ -0.8
SCFD1-220ENST00000556486 PHF13Q86YI8 300 aaPredicted RBP10.07□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 25.8 ms