RNA–Protein interactions for RNA: ENST00000553403.1

CCDC88C-205, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 1 (best) BASIC

Gene CCDC88C, Length 1,651 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-205ENST00000553403 APOBEC2Q9Y235 224 aaKnown RBP26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF711Q9Y462 761 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 TCF3P15923 654 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 PTPN4P29074 926 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 TUBB3Q13509 450 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 PRSS36Q5K4E3 855 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 MAVSQ7Z434 540 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 TTC7BQ86TV6 843 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF781Q8N8C0 355 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 LPGAT1Q92604 370 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 PRR11Q96HE9 360 aaPredicted RBP26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 KLC4Q9NSK0 619 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 TBC1D14Q9P2M4 693 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 DPP7Q9UHL4 492 aa26.31■■□□□ 1.8
CCDC88C-205ENST00000553403 NDUFS3O75489 264 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 CALB2P22676 271 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 IDH3AP50213 366 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 NAGLUP54802 743 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 TIAL1Q01085 375 aaKnown RBP eCLIP26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 PRKAA1Q13131 559 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 SLC5A9Q2M3M2 681 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 TMEM207Q6UWW9 146 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 PACS2Q86VP3 889 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 RIN3Q8TB24 985 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 ANKRD49Q8WVL7 239 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 ISG20Q96AZ6 181 aaKnown RBP26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 ZDHHC7Q9NXF8 308 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 FKBPLQ9UIM3 349 aa26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 EPB41L3Q9Y2J2 1087 aaPredicted RBP26.3■■□□□ 1.8
CCDC88C-205ENST00000553403 CAPN14A8MX76 684 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 SLC4A1P02730 911 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 MC4RP32245 332 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 USP4Q13107 963 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF77Q15935 545 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 PIWIL4Q7Z3Z4 852 aaKnown RBP26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 TMEM25Q86YD3 366 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 CAMK1DQ8IU85 385 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 TXNDC5Q8NBS9 432 aaKnown RBP26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 ATP13A3Q9H7F0 1226 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 IL17CQ9P0M4 197 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 HS3ST2Q9Y278 367 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 PKP3Q9Y446 797 aa26.29■■□□□ 1.8
CCDC88C-205ENST00000553403 F8W8V4 182 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 MGRN1O60291 552 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF821O75541 412 aaPredicted RBP26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 PRSS56P0CW18 603 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 HLA-FP30511 346 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 TTPAP49638 278 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 AARS2Q5JTZ9 985 aaKnown RBP26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 SLC22A9Q8IVM8 553 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 OR2AP1Q8NGE2 309 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 STON2Q8WXE9 905 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 GPR63Q9BZJ6 419 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 UNKQ9C0B0 810 aaKnown RBP26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 SLCO1B7G3V0H7 640 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 ZNF197O14709 1029 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 ARHGEF15O94989 841 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 KRT16P08779 473 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 SRCP12931 536 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 HMGCLP35914 325 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 SNRPD1P62314 119 aaKnown RBP26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 PEX6Q13608 980 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 ARL13AQ5H913 290 aaPredicted RBP26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 DGKKQ5KSL6 1271 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 EPGNQ6UW88 154 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 SPRED2Q7Z698 418 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 PIM3Q86V86 326 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 IRF7Q92985 503 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 OTUB2Q96DC9 234 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 SAMD11Q96NU1 681 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 CCDC106Q9BWC9 280 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 CCDC68Q9H2F9 335 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 POMKQ9H5K3 350 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 NCKIPSDQ9NZQ3 722 aa26.28■■□□□ 1.8
CCDC88C-205ENST00000553403 UBA6A0AVT1 1052 aaPredicted RBP26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 PIGNO95427 931 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 CHRNGP07510 517 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 TFEBP19484 476 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 CD9P21926 228 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 RPL14P50914 215 aaKnown RBP26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 PDAP1Q13442 181 aaKnown RBP26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 DMC1Q14565 340 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 FUT11Q495W5 492 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 CFAP157Q5JU67 520 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 CNDP1Q96KN2 507 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 TUBGCP5Q96RT8 1024 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 TLE6Q9H808 572 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 SYTL2Q9HCH5 934 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 SPHK2Q9NRA0 654 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 VTI1BQ9UEU0 232 aa26.27■■□□□ 1.8
CCDC88C-205ENST00000553403 SRP72O76094 671 aaKnown RBP26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 RHOBTB1O94844 696 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 MPSTP25325 297 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 XIAPP98170 497 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 ELMSAN1Q6PJG2 1045 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 ISCA2Q86U28 154 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 LSMEM2Q8N112 164 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 OR6K2Q8NGY2 324 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 SGF29Q96ES7 293 aa26.26■■□□□ 1.79
CCDC88C-205ENST00000553403 BBS2Q9BXC9 721 aa26.26■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms