RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 SLC39A1Q9NY26 324 aa10.52□□□□□ -0.73
VPS29-208ENST00000550267 LHX3Q9UBR4 397 aa10.52□□□□□ -0.73
VPS29-208ENST00000550267 PLEKHB1Q9UF11 243 aaPredicted RBP10.52□□□□□ -0.73
VPS29-208ENST00000550267 TMEM59LQ9UK28 342 aa10.52□□□□□ -0.73
VPS29-208ENST00000550267 PCDHGC4Q9Y5F7 938 aa10.52□□□□□ -0.73
VPS29-208ENST00000550267 DOCK4Q8N1I0 1966 aa10.52□□□□□ -0.73
VPS29-208ENST00000550267 LOC101059948A0A1B0GTJ6 334 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 TSPAN11A1L157 253 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 ZSCAN5CA6NGD5 496 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 TNFRSF10CO14798 259 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 RECQL5O94762 991 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 LRIG2O94898 1065 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 ECEL1O95672 775 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 KRT7P08729 469 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CCNB1P14635 433 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 NR1D1P20393 614 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 KELP23276 732 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CDH5P33151 784 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 CSTF2P33240 577 aaKnown RBP eCLIP10.51□□□□□ -0.73
VPS29-208ENST00000550267 ADRA1BP35368 520 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 MMP12P39900 470 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 MLLT10P55197 1068 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 KLRB1Q12918 225 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 TRA2AQ13595 282 aaKnown RBP eCLIP10.51□□□□□ -0.73
VPS29-208ENST00000550267 NR1D2Q14995 579 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 TLR1Q15399 786 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CYTH1Q15438 398 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CLPPQ16740 277 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 C15orf59Q2T9L4 293 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 DEFB109BQ30KR1 87 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 INO80DQ53TQ3 878 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 ANKS6Q68DC2 871 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 GBP6Q6ZN66 633 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 FAM129CQ86XR2 697 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 NRROSQ86YC3 692 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 NRSN1Q8IZ57 195 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 UNC5BQ8IZJ1 945 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 PELI3Q8N2H9 469 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 AGBL5Q8NDL9 886 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CCDC112Q8NEF3 446 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 HCAR2Q8TDS4 363 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 PATE1Q8WXA2 126 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CASKIN2Q8WXE0 1202 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 TBC1D31Q96DN5 1066 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 NOL6Q9H6R4 1146 aaKnown RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 GPN2Q9H9Y4 310 aaPredicted RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 SIX2Q9NPC8 291 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 METTL5Q9NRN9 209 aaKnown RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 NOP53Q9NZM5 478 aaKnown RBP10.51□□□□□ -0.73
VPS29-208ENST00000550267 TMEM9Q9P0T7 183 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 DNAJC12Q9UKB3 198 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 TP53TG5Q9Y2B4 290 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 ATP8A1Q9Y2Q0 1164 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 CHD5Q8TDI0 1954 aa10.51□□□□□ -0.73
VPS29-208ENST00000550267 AHCTF1Q8WYP5 2266 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 PRSS38A1L453 326 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 EFCAB7A8K855 629 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 K7EM74 188 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 TEX33O43247 280 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 THRAP10827 490 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 PRKCSHP14314 528 aaPredicted RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 GM2AP17900 193 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 AK4P27144 223 aaPredicted RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 PON1P27169 355 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 CSF2RBP32927 897 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 UQCRFS1P47985 274 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 RALGDSQ12967 914 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 PAK1Q13153 545 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 BIRC2Q13490 618 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 EXOC3L4Q17RC7 722 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 CFAP58Q5T655 872 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 DCAF12Q5T6F0 453 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 ATP1A1-AS1Q5TC04 95 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 TAF3Q5VWG9 929 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 PHLDB2Q86SQ0 1253 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 NLRP8Q86W28 1048 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 DNAAF5Q86Y56 855 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 CAMK1DQ8IU85 385 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 CREBRFQ8IUR6 639 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 OR4D9Q8NGE8 314 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 APOBEC4Q8WW27 367 aaKnown RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 KIAA1143Q96AT1 154 aaPredicted RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 ASPSCR1Q9BZE9 553 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 SPRY4Q9C004 299 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 ZCCHC2Q9C0B9 1178 aaKnown RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 RETREG1Q9H6L5 497 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 CARS2Q9HA77 564 aaKnown RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 KCNK4Q9NYG8 393 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 TAAR2Q9P1P5 351 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 HOOK1Q9UJC3 728 aaKnown RBP10.5□□□□□ -0.73
VPS29-208ENST00000550267 PILRAQ9UKJ1 303 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 ATP6V1DQ9Y5K8 247 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 LRRK1Q38SD2 2015 aa10.5□□□□□ -0.73
VPS29-208ENST00000550267 ANKRD36A6QL64 1941 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 IGHV1OR21-1A0A087WYE8 117 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 ENO4A6NNW6 628 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 B4E171 279 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 BIN1O00499 593 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 PPM1DO15297 605 aa10.49□□□□□ -0.73
VPS29-208ENST00000550267 ZW10O43264 779 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 31.8 ms