RNA–Protein interactions for RNA: ENST00000546534.1

SCAF11-208, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 3

Gene SCAF11, Length 705 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-208ENST00000546534 CTBSQ01459 385 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 MC1RQ01726 317 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 ABHD18Q0P651 414 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 AFMIDQ63HM1 303 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 ELOA2Q8IYF1 753 aaPredicted RBP12.74□□□□□ -0.37
SCAF11-208ENST00000546534 TEX19Q8NA77 164 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 MSANTD4Q8NCY6 345 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 JOSD2Q8TAC2 188 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 STARD8Q92502 1023 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 CENPIQ92674 756 aaPredicted RBP12.74□□□□□ -0.37
SCAF11-208ENST00000546534 TUBGCP5Q96RT8 1024 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 DPYSL5Q9BPU6 564 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 PDP2Q9P2J9 529 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 UBA2Q9UBT2 640 aaPredicted RBP12.74□□□□□ -0.37
SCAF11-208ENST00000546534 SUFUQ9UMX1 484 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 KCNMB2Q9Y691 235 aa12.74□□□□□ -0.37
SCAF11-208ENST00000546534 C2CD4BA6NLJ0 364 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 A8MU76 341 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 J3KR12 359 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 MMEP08473 750 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 GNLYP22749 145 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 SERPINA4P29622 427 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 PTPN9P43378 593 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 GNPDA1P46926 289 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 MC2RQ01718 297 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 RAPGEF1Q13905 1077 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 ACOX1Q15067 660 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 PARP15Q460N3 678 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 CRTC2Q53ET0 693 aaPredicted RBP12.73□□□□□ -0.37
SCAF11-208ENST00000546534 SNAP47Q5SQN1 464 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 TCTN3Q6NUS6 607 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 DPY19L2P1Q6NXN4 242 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 DPPA4Q7L190 304 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 STRADAQ7RTN6 431 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 KDELC2Q7Z4H8 507 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 SRLQ86TD4 932 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 NOP9Q86U38 636 aaKnown RBP12.73□□□□□ -0.37
SCAF11-208ENST00000546534 HEATR4Q86WZ0 1026 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 ZNF761Q86XN6 746 aaPredicted RBP12.73□□□□□ -0.37
SCAF11-208ENST00000546534 UMODL1-AS1Q8N2C9 162 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 NTAN1Q96AB6 310 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 TEX101Q9BY14 249 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 FRMD8Q9BZ67 464 aaPredicted RBP12.73□□□□□ -0.37
SCAF11-208ENST00000546534 ATP13A3Q9H7F0 1226 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 PDFQ9HBH1 243 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 APMAPQ9HDC9 416 aa12.73□□□□□ -0.37
SCAF11-208ENST00000546534 PHPT1Q9NRX4 125 aaPredicted RBP12.73□□□□□ -0.37
SCAF11-208ENST00000546534 MRPS18BQ9Y676 258 aaKnown RBP12.73□□□□□ -0.37
SCAF11-208ENST00000546534 MKRN2OSH3BPM6 223 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 VPS4BO75351 444 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 STK17BO94768 372 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 ADCY8P40145 1251 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 CSNK1DP48730 415 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 POLD2P49005 469 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 GPLD1P80108 840 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 FHL5Q5TD97 284 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 CAPRIN2Q6IMN6 1127 aaKnown RBP12.72□□□□□ -0.37
SCAF11-208ENST00000546534 CEACAM20Q6UY09 585 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 ASB18Q6ZVZ8 466 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 ARHGAP22Q7Z5H3 698 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 SLFN11Q7Z7L1 901 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 PAF1Q8N7H5 531 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 TSEN2Q8NCE0 465 aaKnown RBP12.72□□□□□ -0.37
SCAF11-208ENST00000546534 FAM172AQ8WUF8 416 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 ECHDC3Q96DC8 303 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 COQ10AQ96MF6 247 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 ZMYND15Q9H091 742 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 PRDM8Q9NQV8 689 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 VPS4AQ9UN37 437 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 PLEKHM1Q9Y4G2 1056 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 TMEM184BQ9Y519 407 aaPredicted RBP12.72□□□□□ -0.37
SCAF11-208ENST00000546534 KCTD3Q9Y597 815 aa12.72□□□□□ -0.37
SCAF11-208ENST00000546534 TEP1Q99973 2627 aaKnown RBP12.72□□□□□ -0.37
SCAF11-208ENST00000546534 TRBV23OR9-2A0A075B6M9 112 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 WASH4PA8MWX3 477 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 TRAFD1O14545 582 aaPredicted RBP12.71□□□□□ -0.37
SCAF11-208ENST00000546534 CREB3O43889 395 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 PRAMEF11O60813 436 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 RNF224P0DH78 156 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 F8A1P23610 371 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 ACTR1BP42025 376 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 STAT5AP42229 794 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 MTIF2P46199 727 aaKnown RBP12.71□□□□□ -0.37
SCAF11-208ENST00000546534 PPM1FP49593 454 aaPredicted RBP12.71□□□□□ -0.37
SCAF11-208ENST00000546534 ACTR1AP61163 376 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 POLR2LP62875 67 aaKnown RBP12.71□□□□□ -0.37
SCAF11-208ENST00000546534 BCL2L1Q07817 233 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 CCDC13Q8IYE1 715 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 GALNT11Q8NCW6 608 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 SSC4DQ8WTU2 575 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 NUS1Q96E22 293 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 AHCYL2Q96HN2 611 aaKnown RBP12.71□□□□□ -0.37
SCAF11-208ENST00000546534 ZPBPQ9BS86 351 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 TRIT1Q9H3H1 467 aaKnown RBP12.71□□□□□ -0.37
SCAF11-208ENST00000546534 FBXO8Q9NRD0 319 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 B4GALT6Q9UBX8 382 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 RWDD2AQ9UIY3 292 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 FHOD1Q9Y613 1164 aa12.71□□□□□ -0.37
SCAF11-208ENST00000546534 SEMA7AO75326 666 aa12.7□□□□□ -0.38
SCAF11-208ENST00000546534 DLGAP3O95886 979 aa12.7□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms