RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 ACBD6Q9BR61 282 aa13.73□□□□□ -0.21
VPS33A-208ENST00000543633 TINF2Q9BSI4 451 aa13.73□□□□□ -0.21
VPS33A-208ENST00000543633 FAIMQ9NVQ4 179 aa13.73□□□□□ -0.21
VPS33A-208ENST00000543633 TLL2Q9Y6L7 1015 aa13.73□□□□□ -0.21
VPS33A-208ENST00000543633 NLRC5Q86WI3 1866 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 SAC3D1A6NKF1 404 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 AZIN1O14977 448 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 S1PR4O95977 384 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 THP07101 528 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 GFAPP14136 432 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 LBPP18428 481 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 HMOX2P30519 316 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 RABGGTBP53611 331 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 ACVR1Q04771 509 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF789Q5FWF6 425 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 CLEC6AQ6EIG7 209 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 ABRAXAS1Q6UWZ7 409 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 LAYNQ6UX15 382 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 Q6ZNX1 250 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 EFL1Q7Z2Z2 1120 aaKnown RBP13.72□□□□□ -0.21
VPS33A-208ENST00000543633 SPATA19Q7Z5L4 167 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 CLVS1Q8IUQ0 354 aaPredicted RBP13.72□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF786Q8N393 782 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 GPR150Q8NGU9 434 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 TWIST2Q8WVJ9 160 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 ALG9Q9H6U8 611 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 RIMKLBQ9ULI2 386 aa13.72□□□□□ -0.21
VPS33A-208ENST00000543633 GRXCR2A6NFK2 248 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 ARPC2O15144 300 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 CYP11A1P05108 521 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 CD1DP15813 335 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 CAPN3P20807 821 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 CAPGP40121 348 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 PSEN2P49810 448 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 ZNF157P51786 506 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 PLK1P53350 603 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 MAPRE1Q15691 268 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 FSCN1Q16658 493 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 AASDHQ4L235 1098 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 CTU1Q7Z7A3 348 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 PATL1Q86TB9 770 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 DPP9Q86TI2 863 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 TBC1D21Q8IYX1 336 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 TADA1Q96BN2 335 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 C12orf43Q96C57 262 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 FCRL2Q96LA5 508 aaPredicted RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 C3orf30Q96M34 536 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 ZFP42Q96MM3 310 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 NUSAP1Q9BXS6 441 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 SIK2Q9H0K1 926 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 INTS10Q9NVR2 710 aaKnown RBP13.71□□□□□ -0.21
VPS33A-208ENST00000543633 PCDHA9Q9Y5H5 950 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 DNAJC15Q9Y5T4 150 aa13.71□□□□□ -0.21
VPS33A-208ENST00000543633 CDK14O94921 469 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 SLC6A2P23975 617 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 RFC2P35250 354 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 CDKN2DP55273 166 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 EEFSECP57772 596 aaKnown RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 PRAMEP78395 509 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 GPR158Q5T848 1215 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 BLOC1S3Q6QNY0 202 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 RPS27LQ71UM5 84 aaKnown RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 METTL23Q86XA0 190 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 DCP1BQ8IZD4 617 aaKnown RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 UMODL1-AS1Q8N2C9 162 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 SMYD1Q8NB12 490 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 OSCP1Q8WVF1 389 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 LRRC58Q96CX6 371 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 C1orf74Q96LT6 269 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 PKMYT1Q99640 499 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 SLC39A3Q9BRY0 314 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 NPLQ9BXD5 320 aaPredicted RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 TFB2MQ9H5Q4 396 aaKnown RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 FBRSL1Q9HCM7 1045 aaKnown RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 RGS18Q9NS28 235 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 POLR3BQ9NW08 1133 aaPredicted RBP13.71□□□□□ -0.22
VPS33A-208ENST00000543633 CMTM6Q9NX76 183 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 ZNF639Q9UID6 485 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 DSEQ9UL01 958 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 MYO16Q9Y6X6 1858 aa13.71□□□□□ -0.22
VPS33A-208ENST00000543633 E9PAM4 449 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 H0YAE9 185 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 ACOX3O15254 700 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 CBFA2T3O75081 653 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 PEX11BO96011 259 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 NPPAP01160 153 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 ARSAP15289 507 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 OGNP20774 298 aaKnown RBP13.7□□□□□ -0.22
VPS33A-208ENST00000543633 HOXC8P31273 242 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 CDH15P55291 814 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 SH3BP2P78314 561 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 GRSF1Q12849 480 aaKnown RBP eCLIP13.7□□□□□ -0.22
VPS33A-208ENST00000543633 TMED1Q13445 227 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 FXNQ16595 210 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 RGMBQ6NW40 437 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 TMEM207Q6UWW9 146 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 PRR23BQ6ZRT6 265 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 USP51Q70EK9 711 aa13.7□□□□□ -0.22
VPS33A-208ENST00000543633 DHRSXQ8N5I4 330 aa13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 20.4 ms