RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 MRPS33Q9Y291 106 aaKnown RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 POLR1DQ9Y2S0 133 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 COLEC10Q9Y6Z7 277 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 LRP6O75581 1613 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 TCRBV7S2A1N4TA0A589 114 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 OR2AG2A6NM03 316 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 H3BN98 237 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 BIRC5O15392 142 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 FGF18O76093 207 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 CSKP41240 450 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 IL5RAQ01344 420 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 SDCBP2Q9H190 292 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 IL1RAPL1Q9NZN1 696 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 TCAF1Q9Y4C2 921 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 AHDC1Q5TGY3 1603 aaPredicted RBP14.1□□□□□ -0.15
USP3-204ENST00000540797 C9IYK1 514 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 MAN1A2O60476 641 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 ATG7O95352 703 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 GJA1P17302 382 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 KLHL23Q8NBE8 558 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 TMEM245Q9H330 911 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 KLHL3Q9UH77 587 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 SPEF2Q9C093 1822 aa14.1□□□□□ -0.15
USP3-204ENST00000540797 CCDC189A1A4V9 331 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 PDE5AO76074 875 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 PROCP04070 461 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 LINC00032P0C843 101 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 POLD2P49005 469 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 NCF4Q15080 339 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 TTMPQ5BVD1 217 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 LDLRAD1Q5T700 205 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 C16orf62Q7Z3J2 963 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 TCAIMQ8N3R3 496 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 C2orf73Q8N5S3 287 aaPredicted RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 C10orf71Q711Q0 1435 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 CNOT3O75175 753 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 CBX6O95503 412 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 MT-CYBP00156 380 aaPredicted RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 DDX6P26196 483 aaKnown RBP eCLIP14.09□□□□□ -0.15
USP3-204ENST00000540797 NRIP1P48552 1158 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 CDH13P55290 713 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 RPS24P62847 133 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 C2orf27AQ580R0 203 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 SYPL2Q5VXT5 272 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 TXNDC8Q6A555 127 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 TAPT1Q6NXT6 567 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 R3HCC1LQ7Z5L2 792 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 C10orf107Q8IVU9 208 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 CPT1BQ92523 772 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 AIF1LQ9BQI0 150 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 LRRC4CQ9HCJ2 640 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 ENOPH1Q9UHY7 261 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 LEF1Q9UJU2 399 aaPredicted RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 HDAC3O15379 428 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 UNGP13051 313 aaPredicted RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 PDGFRLQ15198 375 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 ADGRF1Q5T601 910 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 RNASEH2BQ5TBB1 312 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 ZC3H7AQ8IWR0 971 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 POMGNT2Q8NAT1 580 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 TRMT61BQ9BVS5 477 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 ROGDIQ9GZN7 287 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 EXO5Q9H790 373 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 CCSER2Q9H7U1 834 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 ANXA6P08133 673 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 SNRPB2P08579 225 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 VAV1P15498 845 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 LUZP2Q86TE4 346 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 CFAP206Q8IYR0 622 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 HDDC3Q8N4P3 179 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 GPR21Q99679 349 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 AARSD1Q9BTE6 412 aaKnown RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 ARHGAP39Q9C0H5 1083 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 RSPH9Q9H1X1 276 aaPredicted RBP14.09□□□□□ -0.15
USP3-204ENST00000540797 ZNF780BQ9Y6R6 833 aa14.09□□□□□ -0.15
USP3-204ENST00000540797 LBX1P52954 281 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 PKNOX1P55347 436 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 SEMA5AQ13591 1074 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 GPAT3Q53EU6 434 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 SNX30Q5VWJ9 437 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 NELL1Q92832 810 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 C1orf50Q9BV19 199 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 TTLL2Q9BWV7 592 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 SGK2Q9HBY8 427 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 SAR1AQ9NR31 198 aa14.08□□□□□ -0.15
USP3-204ENST00000540797 C2P06681 752 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 SSR2P43308 183 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 LDB1Q86U70 411 aaPredicted RBP14.08□□□□□ -0.16
USP3-204ENST00000540797 PCDH19Q8TAB3 1148 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 DPEP2Q9H4A9 486 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 DNAJC11Q9NVH1 559 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 CCL22O00626 93 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 SMNDC1O75940 238 aaKnown RBP eCLIP14.08□□□□□ -0.164e-9■■■□□ 17.4
USP3-204ENST00000540797 SASH3O75995 380 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 KRT75O95678 551 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 AKT2P31751 481 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 DYNC1I2Q13409 638 aaKnown RBP14.08□□□□□ -0.16
USP3-204ENST00000540797 CA9Q16790 459 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 SH3PXD2AQ5TCZ1 1133 aa14.08□□□□□ -0.16
USP3-204ENST00000540797 STK32CQ86UX6 486 aa14.08□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 66.6 ms