RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 GPN2Q9H9Y4 310 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 VTA1Q9NP79 307 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 MID1IP1Q9NPA3 183 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 PRMT7Q9NVM4 692 aaPredicted RBP12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 BTRCQ9Y297 605 aa12.85□□□□□ -0.35
SFSWAP-209ENST00000540469 TARM1B6A8C7 271 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 ACOX3O15254 700 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 PMPCBO75439 489 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 GABBR2O75899 941 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 CPNE6O95741 557 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 C7P10643 843 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 THRBP10828 461 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 HGFP14210 728 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 SHMT2P34897 504 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 TRPC1P48995 793 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 ECT2LQ008S8 904 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 CLCQ05315 142 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 AKAP14Q86UN6 197 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 RNF34Q969K3 372 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 FBXO5Q9UKT4 447 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 USP3Q9Y6I4 520 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 RBP1P09455 135 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 MAGP20916 626 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 BDNFP23560 247 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC6A2P23975 617 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 PLIN5Q00G26 463 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 DGUOKQ16854 277 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC25A52Q3SY17 297 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 RBM20Q5T481 1227 aaKnown RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 LINC00523Q86TU6 105 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 ITIH5Q86UX2 942 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 SMG8Q8ND04 991 aaKnown RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 TTC16Q8NEE8 873 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC2A14Q8TDB8 520 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 FICDQ9BVA6 458 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 FZD8Q9H461 694 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 MAP10Q9P2G4 905 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 PDE10AQ9Y233 779 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 NOX1Q9Y5S8 564 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 COL2A1P02458 1487 aaPredicted RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 RGPD3A6NKT7 1758 aaPredicted RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 RGPD4Q7Z3J3 1758 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 FAM47E-STBD1D6RA91 191 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 AP3B1O00203 1094 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 DFFAO00273 331 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 ASNA1O43681 348 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 LTA4HP09960 611 aaKnown RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 ALDOCP09972 364 aaKnown RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 NDUFA5Q16718 116 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 MEP1AQ16819 746 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 PCID2Q5JVF3 399 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 C3orf30Q96M34 536 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 TMEM74Q96NL1 305 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 ARPC5LQ9BPX5 153 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 FDXACB1Q9BRP7 624 aaPredicted RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 KIAA1522Q9P206 1035 aaPredicted RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 SLC2A6Q9UGQ3 507 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 MRPL42Q9Y6G3 142 aaKnown RBP12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 NUP205Q92621 2012 aa12.84□□□□□ -0.35
SFSWAP-209ENST00000540469 WDR81Q562E7 1941 aa12.83□□□□□ -0.35
SFSWAP-209ENST00000540469 MT-CYBP00156 380 aaPredicted RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 HSD17B1P14061 328 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 SEPHS1P49903 392 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 KCNC4Q03721 635 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 PKN3Q6P5Z2 889 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 TBPL2Q6SJ96 375 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 CATSPER4Q7RTX7 472 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 RAB44Q7Z6P3 723 aaPredicted RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 SLC22A9Q8IVM8 553 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 PNPLA1Q8N8W4 532 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 CENPIQ92674 756 aaPredicted RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 TRHDEQ9UKU6 1024 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 MAGED1Q9Y5V3 778 aaPredicted RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 MTSS1O43312 755 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 SEC24AO95486 1093 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 LINC00032P0C843 101 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 NOS2P35228 1153 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 ACADSBP45954 432 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 ARSFP54793 590 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 AQP6Q13520 282 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 BTBD8Q5XKL5 378 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 FAM83AQ86UY5 434 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 ZDHHC13Q8IUH4 622 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 SPARTQ8N0X7 666 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 CLIP4Q8N3C7 705 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 MINDY2Q8NBR6 621 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 LEMD2Q8NC56 503 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 EFHD2Q96C19 240 aaPredicted RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 CNDP2Q96KP4 475 aaKnown RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 GPR78Q96P69 363 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 CEP44Q9C0F1 390 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 GMIPQ9P107 970 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 ZNF214Q9UL59 606 aaPredicted RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 LTBP1Q14766 1721 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 PPEF2O14830 753 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 PIP5K1BO14986 540 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 SNPHO15079 494 aa12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 GAS2O43903 313 aaKnown RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 EIF2S1P05198 315 aaKnown RBP12.83□□□□□ -0.36
SFSWAP-209ENST00000540469 GPX3P22352 226 aa12.83□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 147.1 ms