RNA–Protein interactions for RNA: ENST00000533242.1

NEDD8-207, Transcript of neural precursor cell expressed, developmentally down-regulated 8, humanhuman

TSL 1 (best)

Gene NEDD8, Length 2,300 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD8-207ENST00000533242 PDGFRAP16234 1089 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 KRT4P19013 534 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBX4P57082 545 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PPP2CBP62714 309 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PPP2CAP67775 309 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 HADHQ16836 314 aaKnown RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 BBS9Q3SYG4 887 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 CCDC14Q49A88 953 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 NADSYN1Q6IA69 706 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 OR6B2Q6IFH4 312 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PARP9Q8IXQ6 854 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 STK40Q8N2I9 435 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PQLC3Q8N755 202 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PLD5Q8N7P1 536 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PYROXD1Q8WU10 500 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 IRGQQ8WZA9 623 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 P3H4Q92791 437 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PRICKLE1Q96MT3 831 aaPredicted RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TTC25Q96NG3 672 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 CCDC77Q9BR77 488 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 DHRS4Q9BTZ2 278 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 USP29Q9HBJ7 922 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 DOCK9Q9BZ29 2069 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3DA0A087WVF3 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3IA0A087WXS9 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3EA0A087X179 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3KA0A087X1G2 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3FA6NER0 549 aaPredicted RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 B8ZZF3 427 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3LB9A6J9 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TRIM38O00635 465 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PRPF4O43172 522 aaKnown RBP eCLIP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 SIGLEC6O43699 453 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 SUN1O94901 812 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 LUC7L3O95232 432 aaKnown RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3HP0C7X1 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 GPD1P21695 349 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 CA4P22748 312 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 ADRA1DP25100 572 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 MZF1P28698 734 aaPredicted RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 ERVPABLB-1P60509 514 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 DAB2P98082 770 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 ECT2LQ008S8 904 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 BNIP1Q12981 228 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 NOMO1Q15155 1222 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3GQ6DHY5 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3CQ6IPX1 549 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 LCLAT1Q6UWP7 414 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 OLFML1Q6UWY5 402 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TRIM69Q86WT6 500 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 COL27A1Q8IZC6 1860 aaPredicted RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TBC1D3Q8IZP1 549 aaPredicted RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 RIBC1Q8N443 379 aaPredicted RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 CARNMT1Q8N4J0 409 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 CCDC63Q8NA47 563 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 DCAKDQ8WVC6 231 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 SNRNP27Q8WVK2 155 aaKnown RBP8.3□□□□□ -1.08
NEDD8-207ENST00000533242 TTC9Q92623 222 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 DEPDC7Q96QD5 511 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 PAFAH2Q99487 392 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 DPH1Q9BZG8 443 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 SLC17A7Q9P2U7 560 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 ARL2BPQ9Y2Y0 163 aa8.3□□□□□ -1.08
NEDD8-207ENST00000533242 FAM155BO75949 473 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 RNF8O76064 485 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 C1QAP02745 245 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 GSTA1P08263 222 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 KRT16P08779 473 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 C6P13671 934 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 ELK3P41970 407 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 CTSOP43234 321 aaPredicted RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 LSSP48449 732 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 GEMIN4P57678 1058 aaKnown RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 CDH18Q13634 790 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 ELAVL3Q14576 367 aaKnown RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 MS4A13Q5J8X5 152 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 ARHGAP40Q5TG30 622 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 RNF219Q5W0B1 726 aaPredicted RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 SCYL2Q6P3W7 929 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PPP1R21Q6ZMI0 780 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 NETO2Q8NC67 525 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 OR4C6Q8NH72 309 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PCDH19Q8TAB3 1148 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 KCNE4Q8WWG9 221 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PTPRN2Q92932 1015 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 FCRL2Q96LA5 508 aaPredicted RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 CNPY3Q9BT09 278 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PITPNM3Q9BZ71 974 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 ACSS3Q9H6R3 686 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 CPNE5Q9HCH3 593 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PSMC3IPQ9P2W1 217 aaPredicted RBP8.29□□□□□ -1.08
NEDD8-207ENST00000533242 KIAA1257Q9ULG3 409 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PHTF1Q9UMS5 762 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 CHKBQ9Y259 395 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 MFHAS1Q9Y4C4 1052 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 PCDHB1Q9Y5F3 818 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 TCRBV9S1A1TA0A576 114 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 WDR91A4D1P6 747 aa8.29□□□□□ -1.08
NEDD8-207ENST00000533242 MCF2LO15068 1137 aa8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms