RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CHPFQ8IZ52 775 aa21■□□□□ 0.95
VPS28-208ENST00000527797 ZNF513Q8N8E2 541 aaPredicted RBP21■□□□□ 0.95
VPS28-208ENST00000527797 PIP4K2CQ8TBX8 421 aa21■□□□□ 0.95
VPS28-208ENST00000527797 SCG3Q8WXD2 468 aaKnown RBP21■□□□□ 0.95
VPS28-208ENST00000527797 APOPT1Q96IL0 206 aa21■□□□□ 0.95
VPS28-208ENST00000527797 FAM129BQ96TA1 746 aa21■□□□□ 0.95
VPS28-208ENST00000527797 GPR22Q99680 433 aa21■□□□□ 0.95
VPS28-208ENST00000527797 PRSS16Q9NQE7 514 aa21■□□□□ 0.95
VPS28-208ENST00000527797 INTS9Q9NV88 658 aaKnown RBP21■□□□□ 0.95
VPS28-208ENST00000527797 B4GALT6Q9UBX8 382 aa21■□□□□ 0.95
VPS28-208ENST00000527797 ANTXRLA6NF34 631 aa21■□□□□ 0.95
VPS28-208ENST00000527797 C16orf96A6NNT2 1141 aa21■□□□□ 0.95
VPS28-208ENST00000527797 S1PR4O95977 384 aa21■□□□□ 0.95
VPS28-208ENST00000527797 PMLP29590 882 aa21■□□□□ 0.95
VPS28-208ENST00000527797 TYK2P29597 1187 aa21■□□□□ 0.95
VPS28-208ENST00000527797 ENPP2Q13822 863 aa21■□□□□ 0.95
VPS28-208ENST00000527797 LRRC66Q68CR7 880 aa21■□□□□ 0.95
VPS28-208ENST00000527797 CBARPQ8N350 705 aaPredicted RBP21■□□□□ 0.95
VPS28-208ENST00000527797 ISL2Q96A47 359 aa21■□□□□ 0.95
VPS28-208ENST00000527797 ZDHHC4Q9NPG8 344 aa21■□□□□ 0.95
VPS28-208ENST00000527797 HEBP1Q9NRV9 189 aa21■□□□□ 0.95
VPS28-208ENST00000527797 SARDHQ9UL12 918 aa21■□□□□ 0.95
VPS28-208ENST00000527797 FNDC3AQ9Y2H6 1198 aaKnown RBP21■□□□□ 0.95
VPS28-208ENST00000527797 COPEO14579 308 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 ASGR2P07307 311 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 VIPR1P32241 457 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 FOXN2P32314 431 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 KIR2DL1P43626 348 aaPredicted RBP20.99■□□□□ 0.95
VPS28-208ENST00000527797 SEC13P55735 322 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PFKPQ01813 784 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 SEMG2Q02383 582 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PEX6Q13608 980 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 ARHGEF7Q14155 803 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PON2Q15165 354 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 POM121L1PQ3SYA9 428 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 ZRANB3Q5FWF4 1079 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 LRRC73Q5JTD7 316 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PTCRAQ6ISU1 281 aaPredicted RBP20.99■□□□□ 0.95
VPS28-208ENST00000527797 CNSTQ6PJW8 725 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 LDB1Q86U70 411 aaPredicted RBP20.99■□□□□ 0.95
VPS28-208ENST00000527797 MGARPQ8TDB4 240 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PBXIP1Q96AQ6 731 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PPP1R16AQ96I34 528 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PCDH12Q9NPG4 1184 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 SNX15Q9NRS6 342 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 PCMTD2Q9NV79 361 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 APPL1Q9UKG1 709 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 SLC39A10Q9ULF5 831 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 SLC30A1Q9Y6M5 507 aa20.99■□□□□ 0.95
VPS28-208ENST00000527797 MUC22E2RYF6 1773 aaPredicted RBP20.98■□□□□ 0.95
VPS28-208ENST00000527797 FAM95CA0A1B0GW59 222 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 C1QTNF3-AMACRE9PGA6 284 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 PFDN6O15212 129 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 ZWINTO95229 277 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 ZNF30P17039 623 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 LHCGRP22888 699 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 ITGB7P26010 798 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 RPA3P35244 121 aaPredicted RBP20.98■□□□□ 0.95
VPS28-208ENST00000527797 TIE1P35590 1138 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 CCT5P48643 541 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 CLCN5P51795 746 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 PTPN5P54829 565 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 GNGT1P63211 74 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 XIAPP98170 497 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 PTSQ03393 145 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 SEMA3AQ14563 771 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 USP10Q14694 798 aaKnown RBP20.98■□□□□ 0.95
VPS28-208ENST00000527797 TYSND1Q2T9J0 566 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 ZNF789Q5FWF6 425 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 TTC19Q6DKK2 380 aaPredicted RBP20.98■□□□□ 0.95
VPS28-208ENST00000527797 EZH1Q92800 747 aaPredicted RBP20.98■□□□□ 0.95
VPS28-208ENST00000527797 CENPTQ96BT3 561 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 CABS1Q96KC9 395 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 TCF12Q99081 682 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 SLC13A1Q9BZW2 595 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 MKS1Q9NXB0 559 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 FAM50BQ9Y247 325 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 REV3LO60673 3130 aa20.98■□□□□ 0.95
VPS28-208ENST00000527797 TM9SF1O15321 606 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 IL1BP01584 269 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 MPOP05164 745 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 GLULP15104 373 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 BPIP17213 487 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 WASP42768 502 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 MAGEA12P43365 314 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 STC1P52823 247 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 CACNG1Q06432 222 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 GRSF1Q12849 480 aaKnown RBP eCLIP20.97■□□□□ 0.95
VPS28-208ENST00000527797 SEPT7Q16181 437 aaKnown RBP20.97■□□□□ 0.95
VPS28-208ENST00000527797 PUS10Q3MIT2 529 aaKnown RBP20.97■□□□□ 0.95
VPS28-208ENST00000527797 AARS2Q5JTZ9 985 aaKnown RBP20.97■□□□□ 0.95
VPS28-208ENST00000527797 ZDHHC20Q5W0Z9 365 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 ERAP2Q6P179 960 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 PARS2Q7L3T8 475 aaKnown RBP20.97■□□□□ 0.95
VPS28-208ENST00000527797 GPATCH11Q8N954 259 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 KCNV2Q8TDN2 545 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 TCP10LQ8TDR4 215 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 DENND1AQ8TEH3 1009 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 ELMO2Q96JJ3 720 aa20.97■□□□□ 0.95
VPS28-208ENST00000527797 IQCGQ9H095 443 aaKnown RBP20.97■□□□□ 0.95
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms